Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | R3J36_RS10430 | Genome accession | NZ_CP136973 |
| Coordinates | 2279674..2280120 (+) | Length | 148 a.a. |
| NCBI ID | WP_027700144.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8068 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2274674..2285120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J36_RS10410 (R3J36_10390) | - | 2274922..2276259 (+) | 1338 | WP_027700147.1 | HAMP domain-containing sensor histidine kinase | - |
| R3J36_RS10415 (R3J36_10395) | coaE | 2276526..2277149 (-) | 624 | WP_027700146.1 | dephospho-CoA kinase | - |
| R3J36_RS10420 (R3J36_10400) | pilD | 2277161..2278024 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| R3J36_RS10425 (R3J36_10405) | pilC | 2278031..2279233 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| R3J36_RS10430 (R3J36_10410) | pilA/pilAI | 2279674..2280120 (+) | 447 | WP_027700144.1 | pilin | Machinery gene |
| R3J36_RS10435 (R3J36_10415) | - | 2280365..2280592 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| R3J36_RS10440 (R3J36_10420) | pilA/pilAI | 2281425..2281865 (+) | 441 | WP_012338104.1 | pilin | Machinery gene |
| R3J36_RS10445 (R3J36_10425) | pilB | 2282705..2284438 (+) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15379.55 Da Isoelectric Point: 8.4988
>NTDB_id=817028 R3J36_RS10430 WP_027700144.1 2279674..2280120(+) (pilA/pilAI) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKIDAAGTANITCKVKGNSQVNDKTIAWDRTSDNSAGTNGVNNGGVWTCSSTVTSDALRPSGCMAAK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKIDAAGTANITCKVKGNSQVNDKTIAWDRTSDNSAGTNGVNNGGVWTCSSTVTSDALRPSGCMAAK
Nucleotide
Download Length: 447 bp
>NTDB_id=817028 R3J36_RS10430 WP_027700144.1 2279674..2280120(+) (pilA/pilAI) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAATTGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGCTTGGGATCGTACCTCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATGGCTGCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAATTGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGCTTGGGATCGTACCTCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATGGCTGCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.857 |
99.324 |
0.426 |
| pilA | Pseudomonas aeruginosa PAK |
38.994 |
100 |
0.419 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
38.71 |
100 |
0.405 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.71 |
100 |
0.405 |
| pilA | Vibrio cholerae C6706 |
38.71 |
100 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
40 |
100 |
0.405 |