Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QA442_RS04150 Genome accession   NZ_CP121861
Coordinates   814331..814921 (-) Length   196 a.a.
NCBI ID   WP_014665471.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 809331..819921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS04135 (QA442_04135) - 809663..811936 (+) 2274 WP_095431946.1 glycoside hydrolase family 65 protein -
  QA442_RS04140 (QA442_04140) malL 811929..813614 (+) 1686 WP_095431945.1 oligo-1,6-glucosidase -
  QA442_RS04145 (QA442_04145) pgmB 813611..814285 (+) 675 WP_095431944.1 beta-phosphoglucomutase -
  QA442_RS04150 (QA442_04150) clpP 814331..814921 (-) 591 WP_014665471.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QA442_RS04160 (QA442_04160) - 815418..815930 (+) 513 WP_069838667.1 DUF3231 family protein -
  QA442_RS04165 (QA442_04165) - 815966..816286 (-) 321 WP_069150367.1 multidrug efflux SMR transporter -
  QA442_RS04170 (QA442_04170) - 816286..816621 (-) 336 WP_095431943.1 multidrug efflux SMR transporter -
  QA442_RS04175 (QA442_04175) - 816703..817287 (-) 585 WP_014665467.1 TetR family transcriptional regulator -
  QA442_RS04180 (QA442_04180) aspP 817383..818945 (-) 1563 WP_069838669.1 aspartate/proton symporter AspP -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21553.82 Da        Isoelectric Point: 4.8025

>NTDB_id=814884 QA442_RS04150 WP_014665471.1 814331..814921(-) (clpP) [Bacillus stercoris strain Mal05]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=814884 QA442_RS04150 WP_014665471.1 814331..814921(-) (clpP) [Bacillus stercoris strain Mal05]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAACCGAAAGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG
TGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

100

100

1
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

95.918

0.658
  clpP Streptococcus thermophilus LMG 18311

58.163

100

0.582
  clpP Streptococcus thermophilus LMD-9

58.163

100

0.582
  clpP Streptococcus pneumoniae D39

57.812

97.959

0.566
  clpP Streptococcus pneumoniae Rx1

57.812

97.959

0.566
  clpP Streptococcus pneumoniae R6

57.812

97.959

0.566
  clpP Streptococcus pneumoniae TIGR4

57.812

97.959

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.895

96.939

0.561
  clpP Streptococcus pyogenes JRS4

56.122

100

0.561
  clpP Streptococcus pyogenes MGAS315

56.122

100

0.561
  clpP Streptococcus mutans UA159

54.822

100

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.789

96.939

0.541