Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBS10_RS00040 Genome accession   NZ_CP121802
Coordinates   25208..25528 (+) Length   106 a.a.
NCBI ID   WP_005309580.1    Uniprot ID   K1K148
Organism   Aeromonas dhakensis strain BOND 14504     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 20208..30528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS10_RS00015 - 20844..21479 (-) 636 WP_010636289.1 hemolysin III family protein -
  QBS10_RS00020 - 21698..23203 (+) 1506 WP_279451553.1 pyridoxal-dependent decarboxylase -
  QBS10_RS00025 - 23308..23871 (+) 564 WP_065017542.1 septation protein A -
  QBS10_RS00030 - 23896..24192 (+) 297 WP_005309589.1 YciI family protein -
  QBS10_RS00035 cysQ 24271..25041 (-) 771 WP_279451554.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QBS10_RS00040 comEA 25208..25528 (+) 321 WP_005309580.1 ComEA family DNA-binding protein Machinery gene
  QBS10_RS00045 galU 25623..26534 (+) 912 WP_005309577.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS10_RS00050 - 26748..28145 (+) 1398 WP_017783362.1 peptide MFS transporter -
  QBS10_RS00055 - 28221..29192 (-) 972 WP_005309570.1 response regulator -
  QBS10_RS00060 - 29549..30226 (+) 678 WP_279451555.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11183.03 Da        Isoelectric Point: 9.5773

>NTDB_id=814352 QBS10_RS00040 WP_005309580.1 25208..25528(+) (comEA) [Aeromonas dhakensis strain BOND 14504]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814352 QBS10_RS00040 WP_005309580.1 25208..25528(+) (comEA) [Aeromonas dhakensis strain BOND 14504]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACTGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGCCCCGCCACGCTGGAGGCAAATCGGGACATGATCATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1K148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.636

100

0.557
  comEA Vibrio cholerae strain A1552

53.636

100

0.557
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

47.423

91.509

0.434
  comEA Legionella pneumophila strain ERS1305867

41.837

92.453

0.387
  comEA Legionella pneumophila str. Paris

41.837

92.453

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

52.632

71.698

0.377
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377