Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBS22_RS08675 Genome accession   NZ_CP121801
Coordinates   1776761..1777081 (-) Length   106 a.a.
NCBI ID   WP_211052874.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BOND 19077     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771761..1782081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS22_RS08655 - 1772066..1772743 (-) 678 WP_005309566.1 DnaT-like ssDNA-binding domain-containing protein -
  QBS22_RS08660 - 1773100..1774071 (+) 972 WP_005309570.1 response regulator -
  QBS22_RS08665 - 1774144..1775541 (-) 1398 WP_011707249.1 peptide MFS transporter -
  QBS22_RS08670 galU 1775755..1776666 (-) 912 WP_005309577.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS22_RS08675 comEA 1776761..1777081 (-) 321 WP_211052874.1 ComEA family DNA-binding protein Machinery gene
  QBS22_RS08680 cysQ 1777248..1778018 (+) 771 WP_026141488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QBS22_RS08685 - 1778097..1778393 (-) 297 WP_005309589.1 YciI family protein -
  QBS22_RS08690 - 1778418..1778981 (-) 564 WP_005309592.1 septation protein A -
  QBS22_RS08695 - 1779086..1780591 (-) 1506 WP_279485322.1 pyridoxal-dependent decarboxylase -
  QBS22_RS08700 - 1780810..1781445 (+) 636 WP_010636289.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11173.99 Da        Isoelectric Point: 8.9714

>NTDB_id=814342 QBS22_RS08675 WP_211052874.1 1776761..1777081(-) (comEA) [Aeromonas dhakensis strain BOND 19077]
MNYKTLTATLLMSCLPLLSQPLLAADKPAATPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814342 QBS22_RS08675 WP_211052874.1 1776761..1777081(-) (comEA) [Aeromonas dhakensis strain BOND 19077]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGATGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCACACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGCCCCGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.727

100

0.547
  comEA Vibrio cholerae strain A1552

52.727

100

0.547
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

46.392

91.509

0.425
  comEA Legionella pneumophila strain ERS1305867

42.857

92.453

0.396
  comEA Legionella pneumophila str. Paris

42.857

92.453

0.396
  comEA/celA/cilE Streptococcus mitis NCTC 12261

52.632

71.698

0.377
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377