Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBS35_RS16680 Genome accession   NZ_CP121800
Coordinates   3694115..3694435 (+) Length   106 a.a.
NCBI ID   WP_005309580.1    Uniprot ID   K1K148
Organism   Aeromonas dhakensis strain DAMIAN 19342     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689115..3699435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS35_RS16655 - 3689751..3690386 (-) 636 WP_010636289.1 hemolysin III family protein -
  QBS35_RS16660 - 3690605..3692110 (+) 1506 WP_043171883.1 pyridoxal-dependent decarboxylase -
  QBS35_RS16665 - 3692215..3692778 (+) 564 WP_005309592.1 septation protein A -
  QBS35_RS16670 - 3692803..3693099 (+) 297 WP_005309589.1 YciI family protein -
  QBS35_RS16675 cysQ 3693178..3693948 (-) 771 WP_043171882.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QBS35_RS16680 comEA 3694115..3694435 (+) 321 WP_005309580.1 ComEA family DNA-binding protein Machinery gene
  QBS35_RS16685 galU 3694531..3695442 (+) 912 WP_043171881.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS35_RS16690 - 3695656..3697053 (+) 1398 WP_011707249.1 peptide MFS transporter -
  QBS35_RS16695 - 3697126..3698097 (-) 972 WP_005309570.1 response regulator -
  QBS35_RS16700 - 3698454..3699131 (+) 678 WP_005309566.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11183.03 Da        Isoelectric Point: 9.5773

>NTDB_id=814309 QBS35_RS16680 WP_005309580.1 3694115..3694435(+) (comEA) [Aeromonas dhakensis strain DAMIAN 19342]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814309 QBS35_RS16680 WP_005309580.1 3694115..3694435(+) (comEA) [Aeromonas dhakensis strain DAMIAN 19342]
ATGAACTACAAGACCCTGACCGCCACCTTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACTGCACTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K1K148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.636

100

0.557
  comEA Vibrio cholerae strain A1552

53.636

100

0.557
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

47.423

91.509

0.434
  comEA Legionella pneumophila strain ERS1305867

41.837

92.453

0.387
  comEA Legionella pneumophila str. Paris

41.837

92.453

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

52.632

71.698

0.377
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377