Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QBE57_RS01290 Genome accession   NZ_CP121670
Coordinates   251519..252130 (+) Length   203 a.a.
NCBI ID   WP_223375679.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 246519..257130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS01270 - 246676..247506 (+) 831 WP_002937312.1 carbohydrate ABC transporter permease -
  QBE57_RS01275 gtfA 247577..249025 (+) 1449 WP_012027490.1 sucrose phosphorylase -
  QBE57_RS01280 - 249098..250714 (+) 1617 WP_012027489.1 glycoside hydrolase family 13 protein -
  QBE57_RS01285 upp 250794..251423 (+) 630 WP_012027487.1 uracil phosphoribosyltransferase -
  QBE57_RS01290 clpP 251519..252130 (+) 612 WP_223375679.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QBE57_RS01295 - 252257..252529 (+) 273 WP_002937299.1 YlbG family protein -
  QBE57_RS01300 - 252660..253829 (+) 1170 WP_012775268.1 ABC transporter substrate-binding protein -
  QBE57_RS01305 - 254045..254932 (+) 888 WP_012027482.1 branched-chain amino acid ABC transporter permease -
  QBE57_RS01310 - 254935..255882 (+) 948 WP_002937293.1 branched-chain amino acid ABC transporter permease -
  QBE57_RS01315 - 255882..256646 (+) 765 WP_002937291.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22345.73 Da        Isoelectric Point: 6.7324

>NTDB_id=813767 QBE57_RS01290 WP_223375679.1 251519..252130(+) (clpP) [Streptococcus suis strain HBXY-SL]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=813767 QBE57_RS01290 WP_223375679.1 251519..252130(+) (clpP) [Streptococcus suis strain HBXY-SL]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC
ACGCCTTTTGAAAGACCGTATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC
TTTTCCTTGATGCCCAAGACCCTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTT
GCCATTGTAGACACGATGAATTTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT
CATTGCATCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAA
CTGGTGGTGGTACTCAGCAAACAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC
TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCACAAGGATGCGGAACGTGATTACTGGATGTCAGCTGAAGAAAC
CTTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

96.552

0.892
  clpP Streptococcus pyogenes MGAS315

92.347

96.552

0.892
  clpP Streptococcus mutans UA159

90.306

96.552

0.872
  clpP Streptococcus thermophilus LMD-9

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

88.776

96.552

0.857
  clpP Streptococcus pneumoniae R6

89.231

96.059

0.857
  clpP Streptococcus pneumoniae Rx1

89.231

96.059

0.857
  clpP Streptococcus pneumoniae D39

89.231

96.059

0.857
  clpP Streptococcus pneumoniae TIGR4

89.231

96.059

0.857
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

96.552

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

95.074

0.557