Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QA712_RS10705 Genome accession   NZ_CP121539
Coordinates   2005200..2005799 (-) Length   199 a.a.
NCBI ID   WP_011834647.1    Uniprot ID   A0A166TF89
Organism   Lactococcus lactis strain MA5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000200..2010799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS10695 (QA712_10695) acnA 2001329..2003875 (+) 2547 WP_372757138.1 aconitate hydratase AcnA -
  QA712_RS10700 (QA712_10700) icd 2003896..2005134 (+) 1239 WP_047205783.1 NADP-dependent isocitrate dehydrogenase -
  QA712_RS10705 (QA712_10705) clpP 2005200..2005799 (-) 600 WP_011834647.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QA712_RS10710 (QA712_10710) - 2005996..2006526 (+) 531 WP_003129594.1 hypothetical protein -
  QA712_RS10715 (QA712_10715) spx 2006686..2007084 (+) 399 WP_003129597.1 transcriptional regulator Spx -
  QA712_RS10720 (QA712_10720) - 2007465..2008628 (-) 1164 WP_047205785.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22052.21 Da        Isoelectric Point: 4.7423

>NTDB_id=812890 QA712_RS10705 WP_011834647.1 2005200..2005799(-) (clpP) [Lactococcus lactis strain MA5]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=812890 QA712_RS10705 WP_011834647.1 2005200..2005799(-) (clpP) [Lactococcus lactis strain MA5]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGCGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGCATTATCATGCTGACAGGACCTGTTGAAGATGGAATGGCAAATTCTATCATTGCACAACTTCTTTTCTTGGACG
CACAAGATAACACTAAAGATATTTATCTCTACGTAAATACACCTGGTGGTTCTGTATCTGCTGGTCTTGCCATTGTTGAT
ACAATGAATTTTATCAAATCAGATGTTCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATTGCCTCAAG
CGGAACAAAAGGCAAACGATTCATGTTGCCAAATGCTGAGTATCTTATTCACCAACCAATGGGTGGTGCAGGTCAAGGAA
CTCAACAAACTGATATGGCTATTGTTGCTGAGCAACTTTTGAAAACTCGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAACCGTTCACTTGAACAAATTCACAAAGATGCCGAACGTGACCATTGGATGGATGCCAAAGAAACTTTGGAATATGG
TTTCATCGATGAAATTATGGAAAATAATTCCTTAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

100

100

1
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

99.497

100

0.995
  clpP Streptococcus mutans UA159

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMD-9

86.735

98.492

0.854
  clpP Streptococcus thermophilus LMG 18311

86.735

98.492

0.854
  clpP Streptococcus pyogenes MGAS315

85.714

98.492

0.844
  clpP Streptococcus pyogenes JRS4

85.714

98.492

0.844
  clpP Streptococcus pneumoniae D39

84.615

97.99

0.829
  clpP Streptococcus pneumoniae TIGR4

84.615

97.99

0.829
  clpP Streptococcus pneumoniae R6

84.615

97.99

0.829
  clpP Streptococcus pneumoniae Rx1

84.615

97.99

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553