Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   P7Y79_RS02460 Genome accession   NZ_CP121207
Coordinates   509240..509950 (+) Length   236 a.a.
NCBI ID   WP_039696509.1    Uniprot ID   A0A6G8HYC0
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 504240..514950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS02430 (P7Y79_02430) - 504797..505099 (+) 303 WP_074602537.1 hypothetical protein -
  P7Y79_RS02435 (P7Y79_02435) - 505312..505920 (+) 609 WP_006532767.1 TVP38/TMEM64 family protein -
  P7Y79_RS02440 (P7Y79_02440) - 505958..506605 (-) 648 WP_006532766.1 amino acid ABC transporter permease -
  P7Y79_RS02445 (P7Y79_02445) - 506618..507325 (-) 708 WP_039696506.1 amino acid ABC transporter permease -
  P7Y79_RS02450 (P7Y79_02450) - 507341..508153 (-) 813 WP_157629242.1 transporter substrate-binding domain-containing protein -
  P7Y79_RS02455 (P7Y79_02455) - 508164..508928 (-) 765 WP_278007664.1 amino acid ABC transporter ATP-binding protein -
  P7Y79_RS02460 (P7Y79_02460) vicR 509240..509950 (+) 711 WP_039696509.1 response regulator YycF Regulator
  P7Y79_RS02465 (P7Y79_02465) vicK 509943..511295 (+) 1353 WP_039696510.1 cell wall metabolism sensor histidine kinase VicK Regulator
  P7Y79_RS02470 (P7Y79_02470) vicX 511296..512105 (+) 810 WP_278007665.1 MBL fold metallo-hydrolase Regulator
  P7Y79_RS02475 (P7Y79_02475) rnc 512327..513013 (+) 687 WP_020917219.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27121.90 Da        Isoelectric Point: 4.7040

>NTDB_id=811086 P7Y79_RS02460 WP_039696509.1 509240..509950(+) (vicR) [Streptococcus ruminicola strain CNU_77-47]
MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIAKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIE
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=811086 P7Y79_RS02460 WP_039696509.1 509240..509950(+) (vicR) [Streptococcus ruminicola strain CNU_77-47]
ATGAAAAAAATTCTTATTGTTGATGATGAAAAACCAATTTCAGATATTATTAAATTTAACTTAACTAAAGAAGGTTATGA
AACTGTTACGGCTTTTGATGGTCGTGAAGCAATTGCTAAATTTGAAGAAGAAAATCCTGATTTGATTATCTTGGATTTGA
TGTTGCCAGAATTGGATGGACTTGAAGTTGCAAAAGAAGTTCGTAAAACAAGTCATATTCCGATTATTATGCTTTCTGCT
AAAGATAGCGAGTTCGATAAAGTTATCGGTCTTGAAATCGGTGCAGATGACTACGTTACAAAACCTTTCTCAAATCGTGA
ATTGTTAGCACGTGTCAAAGCACACCTTCGTCGTACTGAGAACATCGAATCAGCCGTCGCTGAGGAAAATGCTTCTTCAT
CAAATTCTGAAATTACCATCGGCGATTTGAAGATTTTGCCTGATGCCTTTGTTGCCCAAAAACGTGGCGAAGACATTGAA
TTAACACACCGTGAATTTGAATTACTTCATCACTTAGCTACCCACATGGGACAAGTGATGACGCGTGAATACCTTTTGGA
GACTGTTTGGGGTTATGATTACTTTGGTGATGTCCGCACGGTTGACGTTACCATCCGTCGTTTACGTGAAAAAATCGAAG
ACACTCCGAGCCGTCCAGAATACATTTTGACACGTCGCGGTGTTGGATACTACATGAAGTCTTATGAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.678

100

0.907
  micA Streptococcus pneumoniae Cp1015

78.205

99.153

0.775
  covR Streptococcus salivarius strain HSISS4

46.983

98.305

0.462
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

36.441

100

0.364