Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   P7Y79_RS02470 Genome accession   NZ_CP121207
Coordinates   511296..512105 (+) Length   269 a.a.
NCBI ID   WP_278007665.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 506296..517105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS02445 (P7Y79_02445) - 506618..507325 (-) 708 WP_039696506.1 amino acid ABC transporter permease -
  P7Y79_RS02450 (P7Y79_02450) - 507341..508153 (-) 813 WP_157629242.1 transporter substrate-binding domain-containing protein -
  P7Y79_RS02455 (P7Y79_02455) - 508164..508928 (-) 765 WP_278007664.1 amino acid ABC transporter ATP-binding protein -
  P7Y79_RS02460 (P7Y79_02460) vicR 509240..509950 (+) 711 WP_039696509.1 response regulator YycF Regulator
  P7Y79_RS02465 (P7Y79_02465) vicK 509943..511295 (+) 1353 WP_039696510.1 cell wall metabolism sensor histidine kinase VicK Regulator
  P7Y79_RS02470 (P7Y79_02470) vicX 511296..512105 (+) 810 WP_278007665.1 MBL fold metallo-hydrolase Regulator
  P7Y79_RS02475 (P7Y79_02475) rnc 512327..513013 (+) 687 WP_020917219.1 ribonuclease III -
  P7Y79_RS02480 (P7Y79_02480) smc 513165..516704 (+) 3540 WP_278007666.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30097.94 Da        Isoelectric Point: 5.3610

>NTDB_id=811088 P7Y79_RS02470 WP_278007665.1 511296..512105(+) (vicX) [Streptococcus ruminicola strain CNU_77-47]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQMIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGDRTKRIYLGHLSKENNIKELAHMTMEN
NLMQADFAVGHDMTVFDTSPDEATPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=811088 P7Y79_RS02470 WP_278007665.1 511296..512105(+) (vicX) [Streptococcus ruminicola strain CNU_77-47]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAAAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGATCACATTAAAGGAGTAGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAATGATTGATGAGCGCAACATGATTGGAAAACTTGATGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACTGGTTATGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCGGGTTCTTATCCGTGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCG
ATCGCACAAAAAGAATTTATCTTGGACACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACCATGGAAAAT
AACTTGATGCAAGCCGATTTTGCTGTTGGTCATGACATGACTGTTTTTGATACATCACCTGATGAAGCAACGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77