Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   P7Y79_RS01995 Genome accession   NZ_CP121207
Coordinates   421377..421967 (+) Length   196 a.a.
NCBI ID   WP_039696423.1    Uniprot ID   A0A091BS49
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 419372..428928 421377..421967 within 0


Gene organization within MGE regions


Location: 419372..428928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS01985 (P7Y79_01985) - 419372..420241 (-) 870 WP_278007636.1 LysR family transcriptional regulator -
  P7Y79_RS01990 (P7Y79_01990) - 420355..421248 (+) 894 WP_039696422.1 DMT family transporter -
  P7Y79_RS01995 (P7Y79_01995) clpP 421377..421967 (+) 591 WP_039696423.1 ATP-dependent Clp protease proteolytic subunit Regulator
  P7Y79_RS02000 (P7Y79_02000) - 422072..422512 (+) 441 WP_074626286.1 YlbF family regulator -
  P7Y79_RS02005 (P7Y79_02005) - 422505..422756 (+) 252 WP_020917301.1 YlbG family protein -
  P7Y79_RS02010 (P7Y79_02010) - 422867..424045 (+) 1179 WP_074564249.1 ABC transporter substrate-binding protein -
  P7Y79_RS02015 (P7Y79_02015) - 424103..424987 (+) 885 WP_074564247.1 branched-chain amino acid ABC transporter permease -
  P7Y79_RS02020 (P7Y79_02020) - 424991..425944 (+) 954 WP_158914361.1 branched-chain amino acid ABC transporter permease -
  P7Y79_RS02025 (P7Y79_02025) - 425944..426708 (+) 765 WP_039696427.1 ABC transporter ATP-binding protein -
  P7Y79_RS02030 (P7Y79_02030) - 426708..427418 (+) 711 WP_039696428.1 ABC transporter ATP-binding protein -
  P7Y79_RS02035 (P7Y79_02035) - 427553..428212 (+) 660 WP_157629288.1 CBS domain-containing protein -
  P7Y79_RS02040 (P7Y79_02040) tmk 428302..428928 (+) 627 WP_074564243.1 dTMP kinase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21510.45 Da        Isoelectric Point: 4.3383

>NTDB_id=811084 P7Y79_RS01995 WP_039696423.1 421377..421967(+) (clpP) [Streptococcus ruminicola strain CNU_77-47]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRQNLEQILADNSGQ
SLEKVHADAERDNWMSAQETLEYGFIDEIMVNNELN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=811084 P7Y79_RS01995 WP_039696423.1 421377..421967(+) (clpP) [Streptococcus ruminicola strain CNU_77-47]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGCGGTGAACGCTCATATGATATTTACTCACGTCTTTTGAAAGATCGTAT
CATTATGCTGACTGGACCAGTTGAAGACAATATGGCAAATTCTATTATTGCTCAACTATTGTTCCTTGATGCACAAGATA
ATACAAAAGATATTTACCTTTATGTTAATACACCTGGTGGATCAGTTTCAGCTGGTCTTGCTATTGTAGATACAATGAAC
TTCATTAAATCAGATGTTCAAACTATCGTTATGGGTATGGCAGCATCAATGGGAACAATCATTGCTTCATCAGGTACAAA
AGGTAAACGATTCATGTTGCCAAACGCTGAATATATGATTCACCAACCAATGGGTGGTACTGGTGGCGGTACTCAACAAA
GCGATATGGCTATTGCTGCTGAACACCTTTTGAAAACACGTCAAAACTTGGAACAAATTTTAGCTGACAACTCAGGTCAA
AGTTTGGAAAAAGTTCACGCTGATGCTGAACGTGATAACTGGATGAGCGCTCAAGAAACTCTTGAATACGGCTTTATCGA
TGAAATTATGGTTAACAACGAATTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BS49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

95.897

99.49

0.954
  clpP Streptococcus thermophilus LMD-9

95.897

99.49

0.954
  clpP Streptococcus pneumoniae Rx1

93.367

100

0.934
  clpP Streptococcus pneumoniae D39

93.367

100

0.934
  clpP Streptococcus pneumoniae R6

93.367

100

0.934
  clpP Streptococcus pneumoniae TIGR4

93.367

100

0.934
  clpP Streptococcus pyogenes JRS4

89.286

100

0.893
  clpP Streptococcus pyogenes MGAS315

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.755

100

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.245

100

0.872
  clpP Bacillus subtilis subsp. subtilis str. 168

58.247

98.98

0.577
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.421

96.939

0.566