Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   P7F70_RS01475 Genome accession   NZ_CP121201
Coordinates   275795..277768 (+) Length   657 a.a.
NCBI ID   WP_278024928.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270795..282768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS01455 (P7F70_01455) - 271012..272247 (+) 1236 WP_278024925.1 cysteine desulfurase -
  P7F70_RS01460 (P7F70_01460) sufU 272225..272665 (+) 441 WP_218653982.1 Fe-S cluster assembly sulfur transfer protein SufU -
  P7F70_RS01465 (P7F70_01465) sufB 272909..274318 (+) 1410 WP_278024926.1 Fe-S cluster assembly protein SufB -
  P7F70_RS01470 (P7F70_01470) pbp3 274365..275594 (-) 1230 WP_278024927.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  P7F70_RS01475 (P7F70_01475) amiA 275795..277768 (+) 1974 WP_278024928.1 peptide ABC transporter substrate-binding protein Regulator
  P7F70_RS01480 (P7F70_01480) amiC 277834..279333 (+) 1500 WP_278024929.1 ABC transporter permease Regulator
  P7F70_RS01485 (P7F70_01485) amiD 279333..280259 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  P7F70_RS01490 (P7F70_01490) amiE 280268..281317 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS01495 (P7F70_01495) amiF 281332..282261 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73194.82 Da        Isoelectric Point: 4.4497

>NTDB_id=810979 P7F70_RS01475 WP_278024928.1 275795..277768(+) (amiA) [Streptococcus pluranimalium strain SP28]
MTSKKKLLALAGVALVSTSVLAACGNKSDSKKSDSMSYSYVYATDPKTLDYVTANGGETSELTANFVDGLLENDQYGNLI
PSLAKDWTVSEDGLTYTYKLRDDVYWYTADGEEYAPVTAEDFVTGLKHAADKKSDALYVVQDSVKGLKDYVDGKEKDFKN
VGVKAVDEHTVEYTLNKPESFWNSKTTYGILFPVNAEFLESKGDDFGSPTDPSSLLYNGAYTLSAITSKSSVEMTKNGNY
WDADNVHITDVKLTYYDGSDPDSLFNNFKDGSYSFARLYPNQPSFKKASKEFGDNIYYAQQNASTYMYFFNVNRTANKMT
EKSPEQFEDTKEALQNKDFRQAVTFAFDRASWNSQVAGEEAKDKALRNTLVPPTFVQIDGKDFGDTVTKDLETLGDEWQG
VDIKDAQNGLYDPEKAKAEFEKAKADLGSDVSYPIQIDTVVSQTDELNVQRAKSLKQSVESNLGKENVQINILEKSEEEY
LAATYNAESAEQMDYDITISGWSPDYLDPSSYLDIFSTAESAASTMRLGIDSKNTELVQKVGLDKYQEHLDKASDITDDV
NARYTEYAKAQAWLSDSALVIPTISLGGTPGVTRIQPFTAPFSWVGNKGGTYIYKYQKVQDKPVTTSDYEKALEKWKTKR
DKSNEKATKELADHVAK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=810979 P7F70_RS01475 WP_278024928.1 275795..277768(+) (amiA) [Streptococcus pluranimalium strain SP28]
ATGACAAGTAAAAAGAAATTATTGGCATTAGCCGGTGTAGCACTTGTTTCTACATCCGTTTTAGCAGCTTGTGGTAATAA
ATCAGATTCAAAGAAATCAGATAGTATGTCATACAGCTATGTGTATGCAACAGATCCAAAGACTTTGGATTATGTAACTG
CCAATGGGGGAGAAACTAGTGAGCTTACTGCTAACTTTGTGGATGGTCTTTTAGAAAATGATCAATACGGAAATCTTATT
CCATCGTTGGCAAAAGACTGGACTGTTTCTGAAGACGGTTTAACTTATACTTATAAACTCCGTGATGATGTCTACTGGTA
TACTGCTGATGGTGAAGAATATGCTCCAGTTACAGCTGAAGACTTCGTAACAGGTCTAAAACATGCAGCAGATAAAAAAT
CTGATGCTCTCTATGTTGTCCAAGATTCTGTTAAAGGATTGAAAGACTACGTTGATGGAAAAGAAAAAGACTTTAAAAAC
GTAGGTGTAAAAGCAGTTGATGAGCACACTGTTGAGTATACGCTTAATAAACCTGAAAGTTTCTGGAACTCTAAAACAAC
TTACGGTATTCTTTTCCCAGTCAATGCAGAGTTTTTAGAATCAAAAGGTGATGATTTTGGTTCACCGACAGATCCTTCAA
GTCTTTTGTATAATGGTGCTTATACATTGAGTGCTATCACTTCTAAATCATCTGTAGAAATGACTAAAAACGGAAACTAC
TGGGATGCAGACAATGTTCACATCACAGATGTTAAGTTGACCTACTACGATGGTTCAGATCCTGATTCACTCTTTAATAA
CTTCAAAGATGGATCATATAGCTTTGCCCGTCTCTATCCAAACCAACCAAGCTTCAAGAAAGCTTCTAAAGAGTTTGGTG
ACAACATCTACTATGCTCAACAAAATGCCTCAACTTACATGTACTTCTTCAATGTTAACCGTACAGCTAACAAAATGACG
GAAAAATCGCCAGAACAATTTGAAGATACGAAAGAAGCACTTCAAAACAAAGATTTCCGTCAAGCAGTTACCTTTGCCTT
TGACCGTGCGTCATGGAATTCACAAGTAGCTGGTGAAGAAGCTAAAGATAAAGCCTTGCGTAATACTCTCGTGCCACCAA
CATTTGTTCAAATTGATGGTAAAGACTTCGGAGATACTGTAACTAAAGATTTAGAAACACTTGGTGATGAGTGGCAAGGT
GTTGACATCAAGGATGCTCAGAATGGTTTGTACGATCCAGAAAAAGCCAAAGCTGAGTTCGAAAAGGCTAAAGCAGATCT
AGGATCTGATGTGTCATACCCAATTCAAATCGATACAGTAGTATCTCAAACAGATGAGCTTAACGTTCAACGTGCGAAAT
CGTTGAAACAATCTGTTGAATCTAACTTGGGTAAAGAAAATGTTCAAATCAACATTCTTGAAAAATCTGAAGAAGAATAT
CTAGCAGCTACTTACAATGCTGAATCAGCAGAACAAATGGACTACGATATTACTATTTCAGGTTGGTCACCAGACTATCT
TGACCCATCTTCATACCTTGATATCTTCTCAACAGCAGAAAGTGCAGCATCAACAATGCGTCTAGGTATCGATTCTAAGA
ATACTGAGTTAGTCCAAAAAGTTGGCTTGGATAAATATCAAGAACACCTTGATAAAGCTTCTGACATTACTGACGATGTC
AATGCTCGTTACACTGAATATGCTAAAGCTCAAGCTTGGTTAAGTGATAGTGCTCTTGTTATCCCAACAATCTCACTTGG
TGGTACACCAGGAGTTACTCGTATTCAACCATTTACAGCACCATTCTCATGGGTCGGTAACAAAGGTGGAACTTACATTT
ACAAATATCAAAAAGTTCAAGACAAACCTGTTACAACAAGCGACTATGAAAAAGCTTTAGAAAAATGGAAAACTAAACGT
GACAAATCAAATGAAAAAGCTACAAAAGAATTAGCTGATCACGTTGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.75

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

51.294

100

0.513
  amiA3 Streptococcus thermophilus LMD-9

50.989

100

0.51