Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P7F70_RS01485 Genome accession   NZ_CP121201
Coordinates   279333..280259 (+) Length   308 a.a.
NCBI ID   WP_115129655.1    Uniprot ID   A0A345VHP7
Organism   Streptococcus pluranimalium strain SP28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 274333..285259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS01470 (P7F70_01470) pbp3 274365..275594 (-) 1230 WP_278024927.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  P7F70_RS01475 (P7F70_01475) amiA 275795..277768 (+) 1974 WP_278024928.1 peptide ABC transporter substrate-binding protein Regulator
  P7F70_RS01480 (P7F70_01480) amiC 277834..279333 (+) 1500 WP_278024929.1 ABC transporter permease Regulator
  P7F70_RS01485 (P7F70_01485) amiD 279333..280259 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  P7F70_RS01490 (P7F70_01490) amiE 280268..281317 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS01495 (P7F70_01495) amiF 281332..282261 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  P7F70_RS01500 (P7F70_01500) - 282563..284224 (+) 1662 WP_278024930.1 peptide ABC transporter substrate-binding protein -
  P7F70_RS01505 (P7F70_01505) - 284339..285253 (+) 915 WP_278024931.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34886.00 Da        Isoelectric Point: 8.5817

>NTDB_id=810981 P7F70_RS01485 WP_115129655.1 279333..280259(+) (amiD) [Streptococcus pluranimalium strain SP28]
MAQIDKNKFTFVELDTSAAEVIDSPAYSYWKSVFRQFFAKKSTLVMLIILVAIILMSFIYPMFANYDFKDVSNINDFSKR
FIWPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINTVIGVIVGGIWGVSKSFDRIMLEIYNVISNIPFLLIVIV
LSYSIGAGFWNLIFAFCVTGWLGIAYSIRVQVLRYRDLEYNLASRTLGTPMTKIVLKNLLPQLVSVIMTLVSQMLPMYIS
FEAFLSFFGLGLPISEPSLGRLIANYSTYLTDNAYLFWIPLTTLIMVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=810981 P7F70_RS01485 WP_115129655.1 279333..280259(+) (amiD) [Streptococcus pluranimalium strain SP28]
ATGGCTCAAATCGATAAAAATAAATTTACATTTGTAGAATTAGATACCTCAGCAGCTGAAGTGATTGATTCGCCAGCCTA
TTCTTACTGGAAGTCAGTTTTTCGTCAATTTTTCGCGAAAAAGTCAACGCTTGTCATGTTGATTATCTTAGTTGCTATCA
TTTTGATGAGTTTCATCTATCCTATGTTTGCAAACTATGATTTTAAAGATGTAAGTAATATTAACGATTTCTCTAAACGT
TTTATTTGGCCAAATGGTGAGTACTGGTTTGGAACAGACAAAAATGGTCAATCATTATTTGATGGCGTGTGGTATGGGGC
GAGAAACTCTATCTTAATCTCTGTCATTGCGACATTAATCAATACCGTTATTGGTGTTATTGTCGGTGGCATTTGGGGTG
TGTCTAAGAGTTTTGACCGTATTATGTTAGAAATCTATAATGTCATTTCAAATATTCCTTTCTTATTGATTGTCATTGTT
CTTTCATATTCTATCGGAGCAGGATTCTGGAATCTTATTTTCGCCTTCTGTGTCACGGGTTGGTTGGGGATAGCCTATAG
CATTCGTGTTCAAGTTCTCCGCTATCGCGACTTAGAATACAATTTGGCGAGTCGGACTTTAGGAACCCCAATGACGAAAA
TTGTCCTAAAAAACCTCTTGCCACAATTGGTGTCTGTTATCATGACCTTGGTCAGTCAAATGCTACCGATGTATATTTCT
TTTGAAGCTTTCTTGTCATTCTTTGGACTAGGTCTTCCAATTTCGGAGCCTAGCTTAGGTAGACTTATTGCTAATTATTC
GACTTATTTGACTGATAATGCTTATCTTTTCTGGATCCCACTAACGACCTTGATTATGGTTTCTCTACCGCTCTATATTG
TTGGGCAAAATTTAGCGGATGCTAGTGATCCACGTTCGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345VHP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

71.753

100

0.718
  amiD Streptococcus thermophilus LMD-9

71.753

100

0.718