Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   P7F70_RS01480 Genome accession   NZ_CP121201
Coordinates   277834..279333 (+) Length   499 a.a.
NCBI ID   WP_278024929.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272834..284333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS01465 (P7F70_01465) sufB 272909..274318 (+) 1410 WP_278024926.1 Fe-S cluster assembly protein SufB -
  P7F70_RS01470 (P7F70_01470) pbp3 274365..275594 (-) 1230 WP_278024927.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  P7F70_RS01475 (P7F70_01475) amiA 275795..277768 (+) 1974 WP_278024928.1 peptide ABC transporter substrate-binding protein Regulator
  P7F70_RS01480 (P7F70_01480) amiC 277834..279333 (+) 1500 WP_278024929.1 ABC transporter permease Regulator
  P7F70_RS01485 (P7F70_01485) amiD 279333..280259 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  P7F70_RS01490 (P7F70_01490) amiE 280268..281317 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS01495 (P7F70_01495) amiF 281332..282261 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  P7F70_RS01500 (P7F70_01500) - 282563..284224 (+) 1662 WP_278024930.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56081.13 Da        Isoelectric Point: 10.0377

>NTDB_id=810980 P7F70_RS01480 WP_278024929.1 277834..279333(+) (amiC) [Streptococcus pluranimalium strain SP28]
MKKYILMRILRSLVSIFLVTTLVYTIVYTMVPKSLIFKNDPNYNKMITTPDKKSDYENTVFERMGYIDYMTSKELQEEAS
KEYKNVTTEPTKANKNTYQKFLSASSGKWQLHQFKESKEFYVTRHISIFERVWKFYSNLIVIDHPWKIKDSSNPDLERYV
RFENDPAVGPALVGSGTQHKYLIYFNGSFPFVHQNIVKLNLGVSYPTYANQPVTRIITQGQGKTLQNEVTFPSGSTRNSA
INIYSRTYLSPSKADSQAKRNFGKDDAYTATQNNYSEPSMLKNSFIIGVIGVLIAYALGLPIGMLMSRYKDGWFDRLSTG
TMTFMLALPSVATIYIIRFLGGLVGLPDSFPILGASSPLSYVLPSLVLGILSVPGIVVWFRRYMVDQQASDYVRFARSKG
LSEAEISQKHLFKNAMVPISNGIPTSIAMTIVGATLTETIFAFPGMGKMLIDSVRAANNSMVVGLVFIFTVVSVFALLLG
DLLMTIFDPRIRLTSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=810980 P7F70_RS01480 WP_278024929.1 277834..279333(+) (amiC) [Streptococcus pluranimalium strain SP28]
ATGAAAAAATATATCTTAATGCGTATTTTGCGATCATTAGTTTCTATTTTTTTGGTAACAACACTGGTTTATACAATTGT
CTATACCATGGTACCGAAGAGTTTGATTTTTAAAAATGATCCCAACTATAATAAAATGATTACCACTCCGGACAAAAAAT
CGGATTATGAAAATACGGTTTTTGAAAGGATGGGCTATATTGACTATATGACTTCTAAGGAACTTCAAGAAGAAGCTTCA
AAAGAATATAAAAATGTAACAACAGAGCCAACAAAAGCTAATAAAAACACGTATCAAAAGTTCTTATCAGCAAGTAGTGG
CAAGTGGCAATTGCATCAATTTAAGGAAAGTAAGGAATTTTACGTAACACGTCATATATCAATTTTTGAGCGTGTTTGGA
AGTTCTACTCAAATTTAATTGTGATTGACCATCCTTGGAAAATAAAAGATTCTTCGAATCCTGATTTGGAACGTTACGTT
CGTTTTGAAAATGATCCTGCTGTGGGTCCAGCTCTTGTTGGTTCAGGAACACAGCATAAGTATTTGATTTATTTTAATGG
TTCATTCCCATTTGTACATCAAAATATTGTTAAGCTCAATTTAGGAGTATCTTACCCAACCTATGCCAATCAGCCTGTTA
CTCGTATTATCACACAAGGACAAGGTAAAACGCTGCAAAATGAAGTCACTTTCCCAAGTGGTAGCACTCGAAACTCTGCC
ATCAATATCTATTCAAGAACTTATTTGTCACCTTCGAAAGCAGATTCTCAAGCCAAACGAAACTTTGGTAAAGATGATGC
CTACACAGCCACACAAAACAATTACAGTGAACCGTCAATGTTGAAGAACTCTTTCATTATCGGTGTGATTGGTGTCTTGA
TAGCTTATGCATTAGGTTTACCGATTGGTATGTTAATGTCTCGCTACAAAGATGGTTGGTTTGATAGACTATCAACCGGA
ACAATGACCTTTATGTTGGCTTTGCCAAGTGTTGCTACAATCTATATTATCCGCTTCTTGGGTGGTCTTGTTGGTTTGCC
AGATAGTTTCCCAATTCTAGGAGCATCTAGCCCGCTTTCCTATGTACTACCATCTCTTGTTTTGGGGATTTTAAGTGTTC
CAGGTATCGTGGTTTGGTTCCGTCGTTATATGGTCGATCAACAGGCTAGTGATTATGTTCGCTTTGCTCGTTCAAAAGGA
CTTTCAGAAGCAGAAATTTCACAAAAACATTTATTTAAAAATGCTATGGTGCCCATTTCAAACGGTATTCCAACTTCAAT
TGCCATGACGATTGTAGGTGCTACATTGACAGAGACTATCTTCGCCTTTCCTGGTATGGGTAAAATGTTGATTGACTCTG
TACGAGCTGCTAATAACTCAATGGTTGTCGGTTTAGTCTTTATCTTTACAGTTGTATCGGTCTTCGCTTTGCTACTAGGC
GATCTCTTGATGACTATTTTCGACCCACGTATTCGATTGACTTCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

61.924

100

0.619
  amiC Streptococcus thermophilus LMD-9

61.523

100

0.615
  amiC Streptococcus thermophilus LMG 18311

61.323

100

0.613