Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P7F70_RS01495 Genome accession   NZ_CP121201
Coordinates   281332..282261 (+) Length   309 a.a.
NCBI ID   WP_104967232.1    Uniprot ID   A0A2L0D2U2
Organism   Streptococcus pluranimalium strain SP28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 276332..287261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS01480 (P7F70_01480) amiC 277834..279333 (+) 1500 WP_278024929.1 ABC transporter permease Regulator
  P7F70_RS01485 (P7F70_01485) amiD 279333..280259 (+) 927 WP_115129655.1 oligopeptide ABC transporter permease OppC Regulator
  P7F70_RS01490 (P7F70_01490) amiE 280268..281317 (+) 1050 WP_115129656.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS01495 (P7F70_01495) amiF 281332..282261 (+) 930 WP_104967232.1 ATP-binding cassette domain-containing protein Regulator
  P7F70_RS01500 (P7F70_01500) - 282563..284224 (+) 1662 WP_278024930.1 peptide ABC transporter substrate-binding protein -
  P7F70_RS01505 (P7F70_01505) - 284339..285253 (+) 915 WP_278024931.1 ABC transporter permease -
  P7F70_RS01510 (P7F70_01510) - 285264..286295 (+) 1032 WP_278024932.1 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 34977.10 Da        Isoelectric Point: 5.3231

>NTDB_id=810983 P7F70_RS01495 WP_104967232.1 281332..282261(+) (amiF) [Streptococcus pluranimalium strain SP28]
MSEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDIFFEGEKINGKKSRE
KERELIRKIQMIFQDPAASLNERATIDYIISEGLHNFGLYDNEEDRKAKVRKMIDEVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMRPDFVIADEPISALDVSVRAQVLNLLKELQKEFGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFR
NPIHPYTKSLLSAVPIPDPILERQKELVIYDPSQHDYDTEEPSMVELLPGHYVWGSPTEIAKYKLENPI

Nucleotide


Download         Length: 930 bp        

>NTDB_id=810983 P7F70_RS01495 WP_104967232.1 281332..282261(+) (amiF) [Streptococcus pluranimalium strain SP28]
ATGTCAGAAAAATTAGTTGAAATCAAGGATTTAGAAATCTCCTTCGGTGAAGGGAAAAAGAAATTTGTAGCTGTGAAAAA
CGCCAACTTTTTCATCAATAAAGGAGAAACCTTCTCATTGGTTGGTGAATCTGGTTCAGGTAAGACAACTATCGGTCGTG
CCATTATTGGTTTAAATGATACTAGTGCTGGTGATATTTTCTTTGAAGGAGAAAAAATCAACGGGAAGAAATCTCGTGAA
AAAGAAAGAGAACTCATTCGGAAAATCCAGATGATTTTCCAAGATCCTGCGGCCAGTTTGAATGAACGTGCCACAATTGA
CTATATCATTTCAGAAGGGCTTCATAACTTTGGACTTTATGACAATGAAGAAGATCGTAAAGCGAAAGTTAGAAAAATGA
TCGATGAAGTTGGATTGTTGCCGGAGCACTTGACGCGTTACCCACATGAATTTTCAGGCGGACAACGACAACGTATCGGA
ATAGCTCGTGCCTTGGTTATGCGTCCTGACTTTGTCATTGCGGATGAACCTATTTCCGCCTTAGACGTTTCTGTTCGCGC
ACAGGTTTTGAACCTCTTAAAAGAACTCCAAAAAGAATTTGGTTTAACCTATCTTTTTATTGCCCATGATTTGTCAGTGG
TAAGATTTATTTCGGATCGTATTGCCGTTATCTATAAAGGTGTTATCGTCGAGGTTGCTGAAACGGAAGAATTATTCAGA
AATCCAATTCATCCATACACAAAATCATTGCTATCAGCAGTTCCTATCCCAGATCCAATCTTGGAAAGGCAAAAAGAGTT
GGTTATTTATGACCCAAGTCAGCATGATTATGACACTGAAGAACCAAGTATGGTCGAACTTCTTCCAGGGCATTATGTCT
GGGGAAGCCCGACAGAAATTGCCAAATATAAATTGGAAAACCCTATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D2U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

81.046

99.029

0.803
  amiF Streptococcus thermophilus LMG 18311

80.392

99.029

0.796
  amiF Streptococcus thermophilus LMD-9

80.065

99.029

0.793