Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RQ468_RS16725 Genome accession   NZ_CP135175
Coordinates   3655675..3656316 (-) Length   213 a.a.
NCBI ID   WP_023131162.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_Z1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650675..3661316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ468_RS16710 (RQ468_16710) hupB 3651355..3651627 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  RQ468_RS16715 (RQ468_16715) lon 3651763..3654159 (-) 2397 WP_003087926.1 endopeptidase La -
  RQ468_RS16720 (RQ468_16720) clpX 3654290..3655570 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RQ468_RS16725 (RQ468_16725) clpP 3655675..3656316 (-) 642 WP_023131162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RQ468_RS16730 (RQ468_16730) tig 3656410..3657720 (-) 1311 WP_003087920.1 trigger factor -
  RQ468_RS16735 (RQ468_16735) parR 3657952..3658659 (+) 708 WP_003098126.1 response regulator transcription factor ParR -
  RQ468_RS16740 (RQ468_16740) parS 3658660..3659946 (+) 1287 WP_003087912.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23492.10 Da        Isoelectric Point: 6.3772

>NTDB_id=810463 RQ468_RS16725 WP_023131162.1 3655675..3656316(-) (clpP) [Pseudomonas aeruginosa strain PARM_Z1]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLSHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=810463 RQ468_RS16725 WP_023131162.1 3655675..3656316(-) (clpP) [Pseudomonas aeruginosa strain PARM_Z1]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGTCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.188

90.141

0.606
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.263

89.202

0.582
  clpP Lactococcus lactis subsp. cremoris KW2

52.792

92.488

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.269

92.488

0.474
  clpP Streptococcus mutans UA159

50

92.019

0.46
  clpP Streptococcus pneumoniae R6

50.256

91.549

0.46
  clpP Streptococcus pneumoniae TIGR4

50.256

91.549

0.46
  clpP Streptococcus pyogenes JRS4

50.256

91.549

0.46
  clpP Streptococcus pyogenes MGAS315

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMG 18311

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMD-9

50.256

91.549

0.46
  clpP Streptococcus pneumoniae Rx1

50.256

91.549

0.46
  clpP Streptococcus pneumoniae D39

50.256

91.549

0.46