Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P2A85_RS21820 Genome accession   NZ_CP120853
Coordinates   5043948..5044313 (-) Length   121 a.a.
NCBI ID   WP_340522932.1    Uniprot ID   -
Organism   MAG: Microcoleus anatoxicus isolate Neu2020_A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5038948..5049313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2A85_RS21805 (P2A85_21760) - 5041321..5041755 (-) 435 WP_340522938.1 GxxExxY protein -
  P2A85_RS21810 (P2A85_21765) - 5041890..5043095 (+) 1206 WP_377475465.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P2A85_RS21815 (P2A85_21770) - 5043257..5043754 (+) 498 WP_377475466.1 hypothetical protein -
  P2A85_RS21820 (P2A85_21775) pilH 5043948..5044313 (-) 366 WP_340522932.1 response regulator transcription factor Machinery gene
  P2A85_RS21825 (P2A85_21780) - 5044625..5046946 (-) 2322 WP_377475467.1 GumC family protein -
  P2A85_RS21830 (P2A85_21785) - 5047125..5048609 (-) 1485 WP_377475468.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13541.78 Da        Isoelectric Point: 6.9522

>NTDB_id=808922 P2A85_RS21820 WP_340522932.1 5043948..5044313(-) (pilH) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKTNRPDLVVLDIVMPRMNGYEVCRRLKSDPKTQSLPVVM
CSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLLRA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=808922 P2A85_RS21820 WP_340522932.1 5043948..5044313(-) (pilH) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
ATGAGTACAGTTATGGTTGTTGATGATAGCGTAACTCTGCGGGAGATGATCGCTGACTTGCTCAAAGGTAGAGGACTGAA
CGTCACGGTAGCTAGTGATGGCGTAGAAGCTCTAGAGCAAATTAAGACAAATCGCCCAGATTTGGTCGTTTTGGATATCG
TGATGCCCCGGATGAATGGCTATGAAGTTTGTCGCCGACTCAAAAGTGACCCAAAAACTCAGAGTTTGCCAGTGGTAATG
TGTTCGAGCAAAAGTGAGGAGTTCGATCGCTACTGGGGTATGAAACAAGGCGCCGACGCTTACATTGCTAAGCCCTTTCA
CCCCCAGGAATTGGTAGGCACCATCAAGCAACTGTTGCGGGCTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.5

99.174

0.719
  pilG Acinetobacter baumannii strain A118

43.86

94.215

0.413
  chpA Acinetobacter baumannii strain A118

41.525

97.521

0.405
  chiS Vibrio cholerae strain A1552

40.336

98.347

0.397
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  scnR Streptococcus mutans UA159

37.288

97.521

0.364