Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P6988_RS02575 Genome accession   NZ_CP120719
Coordinates   546095..547210 (-) Length   371 a.a.
NCBI ID   WP_277684554.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 541095..552210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS02545 (P6988_02545) hemF 541647..542564 (-) 918 WP_021458651.1 oxygen-dependent coproporphyrinogen oxidase -
  P6988_RS02550 (P6988_02550) - 542586..543143 (-) 558 WP_006957520.1 L-threonylcarbamoyladenylate synthase -
  P6988_RS02555 (P6988_02555) purE 543340..543825 (+) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  P6988_RS02560 (P6988_02560) - 543830..544963 (+) 1134 WP_171349287.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  P6988_RS02565 (P6988_02565) - 545013..545597 (-) 585 WP_171349288.1 type I DNA topoisomerase -
  P6988_RS02570 (P6988_02570) - 545613..546092 (-) 480 WP_006957516.1 DUF494 family protein -
  P6988_RS02575 (P6988_02575) dprA 546095..547210 (-) 1116 WP_277684554.1 DNA-processing protein DprA Machinery gene
  P6988_RS02580 (P6988_02580) def 547461..547982 (+) 522 WP_006957514.1 peptide deformylase -
  P6988_RS02585 (P6988_02585) fmt 548005..548952 (+) 948 WP_006957513.1 methionyl-tRNA formyltransferase -
  P6988_RS02590 (P6988_02590) rsmB 549009..550289 (+) 1281 WP_019274026.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P6988_RS02595 (P6988_02595) trkA 550339..551715 (+) 1377 WP_006957511.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40426.09 Da        Isoelectric Point: 6.2352

>NTDB_id=808292 P6988_RS02575 WP_277684554.1 546095..547210(-) (dprA) [Vibrio coralliilyticus strain Rb102]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRRLGFSDSQLDYLQHRAAEDIEACFEWQAESSARTIL
PLSDQRYPALLKQADAAPATLFVEGQLESLSRPQMSIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNTVYPARHKKLAQRIVEQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPPAQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=808292 P6988_RS02575 WP_277684554.1 546095..547210(-) (dprA) [Vibrio coralliilyticus strain Rb102]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGACCCAAAACGTTTCAGCGTTTGGT
GGCGGTAGATTCTCCAATTAATATTATTGACTCTTCACCCGAAACATTACGCCGCTTAGGCTTTTCCGACTCGCAACTGG
ACTATCTCCAACATCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CCTTTGAGTGATCAGCGTTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAACACTGTTTGTTGAAGGTCAGTT
AGAGAGTTTGTCTCGGCCGCAAATGTCGATTGTGGGCAGTCGCAATGCCAGTATTGACGGGCTTAACACCGCACGCAGCT
TTGCAACCCAGCTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCCCATGATGGG
GCACTCAATGGCAATGGCCAAACCATCGCCGTGCTCGGTTGTGGCTTAAATACTGTGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTGAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATCACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCCAGCGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.67

98.922

0.62
  dprA Vibrio cholerae strain A1552

57.682

100

0.577
  dprA Glaesserella parasuis strain SC1401

45.479

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.733

96.765

0.423
  dprA Neisseria meningitidis MC58

37.783

100

0.404
  dprA Neisseria meningitidis strain C311

37.783

100

0.404
  dprA Haemophilus influenzae Rd KW20

41.399

92.453

0.383
  dprA Acinetobacter baumannii D1279779

39.881

90.566

0.361