NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	P3X63_RS20265	Genome accession	NZ_CP120679
Coordinates	3912715..3913287 (-)	Length	190 a.a.
NCBI ID	WP_026589047.1	Uniprot ID	A0A6I7EY51
Organism	Bacillus sp. HSf4
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3907715..3918287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3X63_RS20240 (P3X63_20240)	-	3908058..3908468 (-)	411	WP_277691772.1	CBS domain-containing protein	-
P3X63_RS20245 (P3X63_20245)	-	3908534..3909475 (-)	942	WP_026589044.1	magnesium transporter CorA family protein	-
P3X63_RS20250 (P3X63_20250)	-	3909641..3910939 (+)	1299	WP_277691774.1	hemolysin family protein	-
P3X63_RS20255 (P3X63_20255)	-	3911089..3912300 (+)	1212	WP_026589046.1	ammonium transporter	-
P3X63_RS20260 (P3X63_20260)	-	3912320..3912670 (+)	351	WP_003185936.1	P-II family nitrogen regulator	-
P3X63_RS20265 (P3X63_20265)	clpP	3912715..3913287 (-)	573	WP_026589047.1	ATP-dependent Clp protease proteolytic subunit	Regulator
P3X63_RS20270 (P3X63_20270)	-	3913300..3913905 (-)	606	WP_026589048.1	RNA polymerase sigma factor	-
P3X63_RS20275 (P3X63_20275)	-	3914041..3914919 (-)	879	WP_026589049.1	M23 family metallopeptidase	-
P3X63_RS20280 (P3X63_20280)	-	3915122..3915619 (+)	498	WP_077736150.1	GNAT family N-acetyltransferase	-
P3X63_RS20285 (P3X63_20285)	-	3915661..3916104 (-)	444	WP_277691780.1	YwnF family protein	-
P3X63_RS20290 (P3X63_20290)	cls	3916351..3917799 (+)	1449	WP_026589052.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21109.32 Da Isoelectric Point: 4.9347

                                >NTDB_id=807697 P3X63_RS20265 WP_026589047.1 3912715..3913287(-) (clpP) [Bacillus sp. HSf4]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFSDDLANRVTAQLLFLSAEDDEKDISIYINSPGGSTSAGYAILDT

MEYVKPDIRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISARRIIKLKEKIQLFFHERTGQ

PIEKLKADMERDYFMDADEAKAYGIIDDIL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=807697 P3X63_RS20265 WP_026589047.1 3912715..3913287(-) (clpP) [Bacillus sp. HSf4]

ATGAACACCATTCCTTATGTTATTGAAAAAACAGCGGCGGGAGAAAGGTCATACGATATTTTTTCAAGGCTTCTCAAGGA

TCGCATCATTATGATCGGCTCGGAATTTTCGGATGACCTGGCCAATCGCGTCACCGCCCAGCTGCTGTTTTTGTCAGCGG

AGGATGATGAAAAGGATATTTCGATTTACATCAACAGCCCGGGAGGCTCAACATCGGCCGGCTATGCAATATTGGACACG

ATGGAATATGTGAAGCCGGACATCCGCACCATTTGTGTGGGAATGGCGGCTTCCATGGGAGCGATCCTCTTGGCGGGCGG

AACGAAAGGGAAAAGGTATGCCCTTAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGTGTTAAAGGGCAGGCGA

CCGACATGGAGATTTCGGCAAGGCGGATCATCAAGCTGAAGGAAAAAATACAGCTGTTTTTCCATGAGCGGACGGGTCAG

CCTATTGAAAAGTTAAAAGCCGACATGGAACGCGACTATTTTATGGATGCGGATGAAGCGAAGGCATACGGCATCATTGA

TGACATCCTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6I7EY51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	64.211	100	0.642
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.963	98.421	0.6
clpP	Streptococcus thermophilus LMG 18311	54.497	99.474	0.542
clpP	Streptococcus thermophilus LMD-9	54.497	99.474	0.542
clpP	Streptococcus pneumoniae Rx1	53.968	99.474	0.537
clpP	Streptococcus pneumoniae R6	53.968	99.474	0.537
clpP	Streptococcus pneumoniae TIGR4	53.968	99.474	0.537
clpP	Streptococcus pneumoniae D39	53.968	99.474	0.537
clpP	Streptococcus pyogenes MGAS315	53.439	99.474	0.532
clpP	Streptococcus pyogenes JRS4	53.439	99.474	0.532
clpP	Streptococcus mutans UA159	52.91	99.474	0.526
clpP	Lactococcus lactis subsp. cremoris KW2	50.794	99.474	0.505
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.265	99.474	0.5

Detailed information NTG0807697