Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   P3L36_RS01060 Genome accession   NZ_CP120654
Coordinates   146421..146603 (+) Length   60 a.a.
NCBI ID   WP_000965649.1    Uniprot ID   A0AAV3JNR0
Organism   Streptococcus agalactiae strain Guangzhou-SAG036     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 102482..148829 146421..146603 within 0


Gene organization within MGE regions


Location: 102482..148829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L36_RS00715 (P3L36_00715) - 102482..103579 (-) 1098 WP_000570847.1 site-specific integrase -
  P3L36_RS00720 (P3L36_00720) - 103752..104366 (-) 615 WP_000742866.1 hypothetical protein -
  P3L36_RS00725 (P3L36_00725) - 104498..105277 (-) 780 WP_000095652.1 S24 family peptidase -
  P3L36_RS00730 (P3L36_00730) - 105638..105931 (+) 294 WP_270990850.1 ImmA/IrrE family metallo-endopeptidase -
  P3L36_RS00735 (P3L36_00735) - 105915..106085 (-) 171 WP_001097075.1 hypothetical protein -
  P3L36_RS00740 (P3L36_00740) - 106143..106301 (+) 159 WP_001104157.1 hypothetical protein -
  P3L36_RS00745 (P3L36_00745) - 106332..106574 (+) 243 WP_000219235.1 hypothetical protein -
  P3L36_RS00750 (P3L36_00750) - 106560..107117 (-) 558 WP_000880594.1 hypothetical protein -
  P3L36_RS00755 (P3L36_00755) - 107173..107382 (+) 210 WP_001247539.1 hypothetical protein -
  P3L36_RS00760 (P3L36_00760) - 107614..107820 (+) 207 WP_000164462.1 helix-turn-helix transcriptional regulator -
  P3L36_RS00765 (P3L36_00765) - 107874..108833 (+) 960 WP_001156316.1 hypothetical protein -
  P3L36_RS00770 (P3L36_00770) - 108826..109335 (+) 510 WP_000032141.1 ORF6C domain-containing protein -
  P3L36_RS00775 (P3L36_00775) - 109368..109505 (+) 138 WP_000627309.1 hypothetical protein -
  P3L36_RS00780 (P3L36_00780) - 109632..109778 (+) 147 WP_001867241.1 hypothetical protein -
  P3L36_RS00785 (P3L36_00785) - 109741..110049 (-) 309 WP_001000651.1 hypothetical protein -
  P3L36_RS00790 (P3L36_00790) - 110159..110416 (+) 258 WP_016480517.1 hypothetical protein -
  P3L36_RS00795 (P3L36_00795) - 110445..110669 (+) 225 WP_047208982.1 hypothetical protein -
  P3L36_RS00800 (P3L36_00800) - 110745..111458 (+) 714 WP_025196274.1 DnaD domain protein -
  P3L36_RS00805 (P3L36_00805) - 111445..112227 (+) 783 WP_000600243.1 ATP-binding protein -
  P3L36_RS00810 (P3L36_00810) - 112354..112629 (+) 276 WP_000431575.1 hypothetical protein -
  P3L36_RS00815 (P3L36_00815) - 112616..112870 (+) 255 WP_047200442.1 hypothetical protein -
  P3L36_RS00820 (P3L36_00820) - 112872..113033 (+) 162 WP_079398808.1 hypothetical protein -
  P3L36_RS00825 (P3L36_00825) - 113035..113364 (+) 330 WP_047200443.1 hypothetical protein -
  P3L36_RS00830 (P3L36_00830) - 113367..114347 (+) 981 WP_047200444.1 RecT family recombinase -
  P3L36_RS00835 (P3L36_00835) - 114344..115141 (+) 798 WP_047200445.1 PD-(D/E)XK nuclease-like domain-containing protein -
  P3L36_RS00840 (P3L36_00840) - 115302..115499 (+) 198 WP_000474006.1 hypothetical protein -
  P3L36_RS00845 (P3L36_00845) - 115489..115965 (+) 477 WP_000143298.1 RusA family crossover junction endodeoxyribonuclease -
  P3L36_RS00850 (P3L36_00850) - 115955..116302 (+) 348 WP_047200446.1 hypothetical protein -
  P3L36_RS00855 (P3L36_00855) - 116314..116601 (+) 288 WP_071661630.1 nucleotide modification associated domain-containing protein -
  P3L36_RS00860 (P3L36_00860) - 116750..117190 (+) 441 WP_000612732.1 YopX family protein -
  P3L36_RS00865 (P3L36_00865) - 117314..117457 (+) 144 WP_000564605.1 hypothetical protein -
  P3L36_RS00870 (P3L36_00870) - 117454..117966 (+) 513 WP_001019149.1 DUF1642 domain-containing protein -
  P3L36_RS00875 (P3L36_00875) - 117987..118286 (+) 300 WP_001105090.1 hypothetical protein -
  P3L36_RS00880 (P3L36_00880) - 118474..118668 (+) 195 WP_000221696.1 hypothetical protein -
  P3L36_RS00885 (P3L36_00885) - 118665..118931 (+) 267 WP_000660741.1 hypothetical protein -
  P3L36_RS00890 (P3L36_00890) - 119322..119756 (+) 435 WP_000142570.1 ArpU family phage packaging/lysis transcriptional regulator -
  P3L36_RS00900 (P3L36_00900) - 120312..120440 (+) 129 WP_017647279.1 hypothetical protein -
  P3L36_RS00905 (P3L36_00905) - 120494..120871 (-) 378 WP_000964195.1 type II toxin-antitoxin system HicB family antitoxin -
  P3L36_RS00910 (P3L36_00910) - 120924..121109 (-) 186 WP_001132272.1 type II toxin-antitoxin system HicA family toxin -
  P3L36_RS00915 (P3L36_00915) - 121210..121548 (+) 339 WP_001247768.1 HNH endonuclease signature motif containing protein -
  P3L36_RS00920 (P3L36_00920) - 121720..122187 (+) 468 WP_000532791.1 phage terminase small subunit P27 family -
  P3L36_RS00925 (P3L36_00925) - 122202..123956 (+) 1755 WP_000151569.1 terminase TerL endonuclease subunit -
  P3L36_RS00930 (P3L36_00930) - 123953..124120 (+) 168 WP_000578945.1 hypothetical protein -
  P3L36_RS00935 (P3L36_00935) - 124117..124347 (+) 231 WP_001042284.1 hypothetical protein -
  P3L36_RS00940 (P3L36_00940) - 124354..125574 (+) 1221 WP_000007732.1 phage portal protein -
  P3L36_RS00945 (P3L36_00945) - 125552..126217 (+) 666 WP_071661629.1 head maturation protease, ClpP-related -
  P3L36_RS00950 (P3L36_00950) - 126241..127425 (+) 1185 WP_000459130.1 phage major capsid protein -
  P3L36_RS00955 (P3L36_00955) - 127439..127600 (+) 162 WP_017285214.1 hypothetical protein -
  P3L36_RS00960 (P3L36_00960) - 127603..127905 (+) 303 WP_000218659.1 head-tail connector protein -
  P3L36_RS00965 (P3L36_00965) - 127902..128249 (+) 348 WP_000632972.1 phage head closure protein -
  P3L36_RS00970 (P3L36_00970) - 128246..128623 (+) 378 WP_000160228.1 HK97-gp10 family putative phage morphogenesis protein -
  P3L36_RS00975 (P3L36_00975) - 128620..129045 (+) 426 WP_000559944.1 hypothetical protein -
  P3L36_RS00980 (P3L36_00980) - 129061..129684 (+) 624 WP_000521118.1 major tail protein -
  P3L36_RS00985 (P3L36_00985) - 129738..130058 (+) 321 WP_000273027.1 hypothetical protein -
  P3L36_RS00990 (P3L36_00990) - 130088..130255 (+) 168 WP_000264971.1 hypothetical protein -
  P3L36_RS00995 (P3L36_00995) - 130268..134209 (+) 3942 WP_050977834.1 phage tail tape measure protein -
  P3L36_RS01000 (P3L36_01000) - 134206..135729 (+) 1524 WP_050977835.1 distal tail protein Dit -
  P3L36_RS01005 (P3L36_01005) - 135720..139547 (+) 3828 WP_050977836.1 phage tail protein -
  P3L36_RS01010 (P3L36_01010) - 139558..141570 (+) 2013 WP_050977837.1 DUF859 family phage minor structural protein -
  P3L36_RS01015 (P3L36_01015) - 141584..141910 (+) 327 WP_000404431.1 DUF1366 domain-containing protein -
  P3L36_RS01020 (P3L36_01020) - 141885..142097 (+) 213 WP_000698337.1 hypothetical protein -
  P3L36_RS01025 (P3L36_01025) - 142110..142412 (+) 303 WP_000215499.1 hypothetical protein -
  P3L36_RS01030 (P3L36_01030) - 142414..142668 (+) 255 WP_000611524.1 phage holin -
  P3L36_RS01035 (P3L36_01035) - 142794..144128 (+) 1335 WP_000257234.1 GH25 family lysozyme -
  P3L36_RS01040 (P3L36_01040) - 144293..145189 (+) 897 WP_001061853.1 sensor histidine kinase -
  P3L36_RS01045 (P3L36_01045) - 145183..145482 (+) 300 WP_000258211.1 STAS-like domain-containing protein -
  P3L36_RS01050 (P3L36_01050) - 145592..145792 (+) 201 WP_000076712.1 CsbD family protein -
  P3L36_RS01055 (P3L36_01055) - 145833..146003 (-) 171 WP_000356856.1 hypothetical protein -
  P3L36_RS01060 (P3L36_01060) prx 146421..146603 (+) 183 WP_000965649.1 hypothetical protein Regulator
  P3L36_RS01065 (P3L36_01065) - 146816..147508 (+) 693 WP_000049277.1 histidine phosphatase family protein -
  P3L36_RS01070 (P3L36_01070) - 147505..148257 (+) 753 WP_000739666.1 M15 family metallopeptidase -
  P3L36_RS01075 (P3L36_01075) - 148254..148829 (+) 576 WP_001231504.1 glucosaminidase domain-containing protein -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 7024.13 Da        Isoelectric Point: 4.1954

>NTDB_id=807503 P3L36_RS01060 WP_000965649.1 146421..146603(+) (prx) [Streptococcus agalactiae strain Guangzhou-SAG036]
MLYIDEFKEAIEKGYISSDTVMVVRKNGKIFDYVLPGEPVRLWEVATEEKVEEVLMELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=807503 P3L36_RS01060 WP_000965649.1 146421..146603(+) (prx) [Streptococcus agalactiae strain Guangzhou-SAG036]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGAAAAAGGATATATCAGCAGTGATACAGTGATGGTTGTGCGTAAGAA
CGGAAAGATATTTGATTATGTGTTACCTGGTGAGCCTGTAAGATTGTGGGAAGTTGCGACAGAGGAAAAAGTGGAAGAAG
TGTTGATGGAATTAGATAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

68.333

100

0.683

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS8232

65

100

0.65

  prx Streptococcus pyogenes MGAS315

82.927

68.333

0.567

  prx Streptococcus pyogenes MGAS315

73.171

68.333

0.5

  prx Streptococcus pyogenes MGAS315

70.732

68.333

0.483