NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	P5653_RS18835	Genome accession	NZ_CP120610
Coordinates	3691589..3692185 (+)	Length	198 a.a.
NCBI ID	WP_003185550.1	Uniprot ID	A0A1J6GJE1
Organism	Bacillus paralicheniformis strain DSM 28591
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3686589..3697185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5653_RS18810 (P5653_18810)	-	3687549..3688994 (+)	1446	WP_023856345.1	glycoside hydrolase family 68 protein	-
P5653_RS18815 (P5653_18815)	-	3689074..3690621 (+)	1548	WP_039073036.1	glycoside hydrolase family 32 protein	-
P5653_RS18820 (P5653_18820)	-	3690686..3690838 (-)	153	WP_164468296.1	hypothetical protein	-
P5653_RS18835 (P5653_18835)	clpP	3691589..3692185 (+)	597	WP_003185550.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
P5653_RS18840 (P5653_18840)	-	3692260..3692835 (-)	576	WP_023856348.1	TIGR00730 family Rossman fold protein	-
P5653_RS18845 (P5653_18845)	-	3692946..3693281 (+)	336	WP_020453047.1	MazG-like family protein	-
P5653_RS18850 (P5653_18850)	-	3693268..3694245 (+)	978	WP_020453048.1	HD domain-containing protein	-
P5653_RS18855 (P5653_18855)	-	3694293..3695912 (-)	1620	WP_020453049.1	solute carrier family 23 protein	-
P5653_RS18860 (P5653_18860)	-	3695913..3696512 (-)	600	WP_020453050.1	carbonic anhydrase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21803.99 Da Isoelectric Point: 4.7982

                                >NTDB_id=806854 P5653_RS18835 WP_003185550.1 3691589..3692185(+) (clpP) [Bacillus paralicheniformis strain DSM 28591]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ

PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=806854 P5653_RS18835 WP_003185550.1 3691589..3692185(+) (clpP) [Bacillus paralicheniformis strain DSM 28591]

ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA

CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG

AAGATCCAGAAAAAGATATCAGCATCTATATTAACAGCCCTGGCGGCTCTATCACAGCCGGCATGGCGATTTATGACACC

ATGCAGTTCATTAAACCTCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGTGCGTTCCTTCTCGCAGCCGG

CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAAGGTCAGGCAA

CAGAAATCGAAATTGCCGCGAAGCGCATTCTTTCATTGCGTGACAAACTGAACAAAATTCTTGCAGAGCGCACTGGACAA

CCGCTTGAAGTGATCGAGCGCGATACAGACCGTGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA

TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.386	99.495	0.919
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.229	96.97	0.662
clpP	Streptococcus thermophilus LMG 18311	58.031	97.475	0.566
clpP	Streptococcus thermophilus LMD-9	58.031	97.475	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	56.995	97.475	0.556
clpP	Streptococcus pneumoniae Rx1	56.995	97.475	0.556
clpP	Streptococcus pneumoniae D39	56.995	97.475	0.556
clpP	Streptococcus pneumoniae R6	56.995	97.475	0.556
clpP	Streptococcus pneumoniae TIGR4	56.995	97.475	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.922	97.475	0.535

Detailed information NTG0806854