Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   P5638_RS06155 Genome accession   NZ_CP120599
Coordinates   1246282..1246878 (-) Length   198 a.a.
NCBI ID   WP_024427684.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241282..1251878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS06130 (P5638_06130) - 1241365..1242342 (-) 978 WP_135031249.1 D-glycerate dehydrogenase -
  P5638_RS06135 (P5638_06135) - 1242896..1243477 (+) 582 WP_025094003.1 carbonic anhydrase -
  P5638_RS06140 (P5638_06140) - 1243515..1245137 (+) 1623 WP_277722773.1 SulP family inorganic anion transporter -
  P5638_RS06145 (P5638_06145) - 1245164..1245505 (-) 342 WP_025094005.1 MazG-like family protein -
  P5638_RS06150 (P5638_06150) - 1245643..1246221 (+) 579 WP_277722774.1 TIGR00730 family Rossman fold protein -
  P5638_RS06155 (P5638_06155) clpP 1246282..1246878 (-) 597 WP_024427684.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  P5638_RS06165 (P5638_06165) - 1247394..1247576 (-) 183 WP_103131649.1 hypothetical protein -
  P5638_RS06170 (P5638_06170) - 1247788..1248948 (+) 1161 WP_277722775.1 macrolide family glycosyltransferase -
  P5638_RS06175 (P5638_06175) abc-f 1249341..1250900 (+) 1560 WP_277722974.1 ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=806496 P5638_RS06155 WP_024427684.1 1246282..1246878(-) (clpP) [Bacillus safensis strain PRO114]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=806496 P5638_RS06155 WP_024427684.1 1246282..1246878(-) (clpP) [Bacillus safensis strain PRO114]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
AGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTCGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53