Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   P3R60_RS03320 Genome accession   NZ_CP120510
Coordinates   669326..669916 (-) Length   196 a.a.
NCBI ID   WP_104967377.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 664326..674916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS03300 - 665068..665937 (-) 870 WP_104967380.1 branched-chain amino acid ABC transporter permease -
  P3R60_RS03305 - 666073..667248 (-) 1176 WP_316606638.1 ABC transporter substrate-binding protein -
  P3R60_RS03310 - 667572..668915 (+) 1344 WP_316606133.1 IS3 family transposase -
  P3R60_RS03315 - 668965..669222 (-) 258 WP_218654088.1 DUF2129 domain-containing protein -
  P3R60_RS03320 clpP 669326..669916 (-) 591 WP_104967377.1 ATP-dependent Clp protease proteolytic subunit Regulator
  P3R60_RS03325 upp 670179..670808 (-) 630 WP_104967376.1 uracil phosphoribosyltransferase -
  P3R60_RS03330 - 670900..672066 (-) 1167 WP_218654087.1 MalY/PatB family protein -
  P3R60_RS03335 - 672076..673170 (-) 1095 WP_278025033.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21635.83 Da        Isoelectric Point: 4.6424

>NTDB_id=805843 P3R60_RS03320 WP_104967377.1 669326..669916(-) (clpP) [Streptococcus pluranimalium strain SP21-2]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMMHQPMGGTGGGTQQTDMAIAAEHLLKTRHKLEKILSDNSGQ
TMEKIHIDAERDRWMDAEETLEYGFIDAIMDNNELK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=805843 P3R60_RS03320 WP_104967377.1 669326..669916(-) (clpP) [Streptococcus pluranimalium strain SP21-2]
ATGATTCCAGTAGTTATTGAACAAACATCACGTGGCGAACGCTCTTACGATATTTATTCACGTCTCTTAAAAGACCGTAT
TATCATGTTGACTGGTCCAGTTGAAGACAACATGGCTAACTCAGTGATTGCCCAGTTGCTCTTCTTGGATGCACAGGATC
CAACCAAAGATATTTACCTTTACGTTAACACACCAGGGGGTTCGGTTTCAGCTGGCTTAGCAATTGTTGATACCATGAAC
TTCATAAAAGCTGATGTCCAAACTATTGTTATGGGAATGGCAGCTTCAATGGGAACTATTATCGCTTCATCAGGTGCTAA
AGGTAAACGTTTTATGTTACCAAATGCAGAATACATGATGCACCAACCAATGGGCGGTACTGGTGGAGGTACCCAACAAA
CGGATATGGCTATTGCGGCTGAACACCTTTTGAAAACACGTCACAAATTAGAAAAAATTCTTTCTGATAACTCAGGACAA
ACTATGGAGAAAATCCATATTGATGCTGAACGTGATCGTTGGATGGATGCTGAGGAAACCCTTGAGTATGGTTTCATTGA
CGCTATCATGGATAATAATGAGTTGAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.795

99.49

0.913
  clpP Streptococcus pneumoniae D39

91.795

99.49

0.913
  clpP Streptococcus pneumoniae R6

91.795

99.49

0.913
  clpP Streptococcus pneumoniae TIGR4

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

90.816

100

0.908
  clpP Streptococcus pyogenes JRS4

90.816

100

0.908
  clpP Streptococcus thermophilus LMG 18311

89.796

100

0.898
  clpP Streptococcus thermophilus LMD-9

89.796

100

0.898
  clpP Streptococcus mutans UA159

89.286

100

0.893
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.694

100

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.184

100

0.842
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

98.469

0.561