Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LLUC147_RS05780 Genome accession   NZ_CP120473
Coordinates   1127965..1128813 (+) Length   282 a.a.
NCBI ID   WP_134047357.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC147     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1122965..1133813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC147_RS05750 (LLUC147_05770) ilvC 1123404..1124426 (+) 1023 WP_134047358.1 ketol-acid reductoisomerase -
  LLUC147_RS05755 (LLUC147_05775) - 1124485..1125204 (+) 720 Protein_1109 pyridoxal-phosphate dependent enzyme -
  LLUC147_RS05760 (LLUC147_05780) - 1125261..1125941 (-) 681 WP_010890648.1 IS6-like element ISS1S family transposase -
  LLUC147_RS05765 (LLUC147_05785) - 1126015..1126551 (+) 537 Protein_1111 pyridoxal-phosphate dependent enzyme -
  LLUC147_RS05770 (LLUC147_05790) budA 1126686..1127396 (+) 711 WP_011676302.1 acetolactate decarboxylase -
  LLUC147_RS05775 (LLUC147_05795) - 1127436..1127816 (+) 381 WP_014572603.1 RidA family protein -
  LLUC147_RS05780 (LLUC147_05800) dprA 1127965..1128813 (+) 849 WP_134047357.1 DNA-processing protein DprA Machinery gene
  LLUC147_RS05785 (LLUC147_05805) topA 1129079..1131205 (+) 2127 WP_134047356.1 type I DNA topoisomerase -
  LLUC147_RS05790 (LLUC147_05810) trmFO 1131277..1132623 (+) 1347 WP_081196628.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLUC147_RS05795 (LLUC147_05815) xerS 1132673..1133743 (-) 1071 WP_014572599.1 tyrosine recombinase XerS -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31950.16 Da        Isoelectric Point: 9.9508

>NTDB_id=805780 LLUC147_RS05780 WP_134047357.1 1127965..1128813(+) (dprA) [Lactococcus cremoris strain UC147]
MITNFDLFRWKKAGMTNLGVNKLLKFFRKYDIKISLRQMGQVAQVKSIPNFIEQYKNQDVKKLRIDYKKFSSFSILDDLY
PERLREIYNPPVLIFYQGNIDLLKNPKLAFVGSRLAGQSGIKAVQKIITELNQSFTIVSGLAKGIDTASHLSAIKTKTPT
IAVIGTGLDIFYPLENRKIQEYLAKNQLVLSEYSLGEKPLKYYFPERNRIIAGLSRGVVVVEAKLRSGSLITCERALEEG
RDIFAIPGNIADGKSDGCNHLIQQGAKLVYQAQDILEEYLYN

Nucleotide


Download         Length: 849 bp        

>NTDB_id=805780 LLUC147_RS05780 WP_134047357.1 1127965..1128813(+) (dprA) [Lactococcus cremoris strain UC147]
ATGATTACAAATTTTGATTTATTTCGTTGGAAAAAAGCAGGAATGACCAATCTTGGTGTAAATAAGCTCTTAAAATTTTT
CCGCAAATATGATATAAAAATAAGCTTACGACAAATGGGACAAGTGGCTCAAGTCAAATCAATCCCTAACTTTATCGAAC
AATATAAAAATCAGGACGTAAAGAAACTCAGGATAGACTATAAAAAATTTTCCTCCTTTTCCATTCTTGATGACCTTTAT
CCCGAGCGTCTAAGAGAAATCTACAACCCACCCGTTTTAATTTTTTATCAGGGAAATATTGATTTATTAAAAAATCCTAA
ACTTGCCTTTGTTGGAAGCCGCCTAGCAGGTCAATCAGGGATAAAAGCTGTCCAAAAAATTATCACAGAATTGAATCAAT
CCTTTACAATAGTAAGCGGGCTTGCTAAAGGGATTGACACAGCCAGCCATCTGTCAGCAATTAAAACTAAAACACCAACA
ATTGCTGTTATTGGTACAGGATTGGATATTTTCTATCCACTAGAAAATCGTAAAATACAGGAATATCTAGCAAAAAATCA
ATTAGTTTTAAGTGAATATTCATTAGGCGAAAAACCACTTAAATACTACTTTCCAGAGCGCAATCGAATTATTGCTGGTC
TTTCACGGGGAGTTGTTGTCGTGGAAGCAAAATTAAGAAGTGGCAGTTTAATCACCTGTGAAAGGGCACTGGAAGAAGGA
AGAGATATCTTTGCCATCCCTGGAAATATTGCAGATGGAAAATCTGATGGCTGTAATCATCTTATTCAACAAGGAGCAAA
ACTTGTCTATCAAGCTCAAGATATTTTAGAAGAATATTTGTACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-270)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

97.518

100

0.975
  dprA Streptococcus mutans UA159

58.993

98.582

0.582
  dprA/cilB/dalA Streptococcus mitis SK321

55.714

99.291

0.553
  dprA/cilB/dalA Streptococcus pneumoniae R6

55.357

99.291

0.55
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

55.357

99.291

0.55
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

55.357

99.291

0.55
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

55.357

99.291

0.55
  dprA/cilB/dalA Streptococcus pneumoniae D39

55.357

99.291

0.55
  dprA Vibrio campbellii strain DS40M4

35.644

100

0.383
  dprA Haemophilus influenzae Rd KW20

39.63

95.745

0.379
  dprA Bacillus subtilis subsp. subtilis str. 168

38.909

97.518

0.379
  dprA Legionella pneumophila strain ERS1305867

38.768

97.872

0.379