Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RJ645_RS18180 Genome accession   NZ_CP134366
Coordinates   3753811..3754434 (-) Length   207 a.a.
NCBI ID   WP_310984746.1    Uniprot ID   -
Organism   Escherichia coli strain TUM12368     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3748811..3759434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ645_RS18165 (RJ645_18165) hupB 3749388..3749678 (-) 291 WP_254892905.1 nucleoid-associated protein HU-beta -
  RJ645_RS18170 (RJ645_18170) lon 3749869..3752223 (-) 2355 WP_001295325.1 endopeptidase La -
  RJ645_RS18175 (RJ645_18175) clpX 3752411..3753685 (-) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  RJ645_RS18180 (RJ645_18180) clpP 3753811..3754434 (-) 624 WP_310984746.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RJ645_RS18185 (RJ645_18185) tig 3754680..3755978 (-) 1299 WP_001198386.1 trigger factor -
  RJ645_RS18190 (RJ645_18190) bolA 3756322..3756639 (-) 318 WP_000973448.1 transcriptional regulator BolA -
  RJ645_RS18195 (RJ645_18195) yajG 3756944..3757522 (+) 579 WP_053273878.1 lipoprotein -
  RJ645_RS18200 (RJ645_18200) ampG 3757566..3759041 (+) 1476 WP_000098423.1 muropeptide MFS transporter AmpG -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23154.59 Da        Isoelectric Point: 5.6032

>NTDB_id=803034 RJ645_RS18180 WP_310984746.1 3753811..3754434(-) (clpP) [Escherichia coli strain TUM12368]
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHVANLIVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=803034 RJ645_RS18180 WP_310984746.1 3753811..3754434(-) (clpP) [Escherichia coli strain TUM12368]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACCCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGAGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACGTGG
CTAACCTGATTGTGGCGCAGATGCTGTTCCTGGAAGCAGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCTCCA
GGCGGGGTGATTACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCACCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACTGCAGGGGCAAAAGGTAAACGTTTCTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAGCCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCCGCCCCTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.312

92.754

0.652
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

90.821

0.623
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

93.72

0.527
  clpP Streptococcus pneumoniae R6

54.639

93.72

0.512
  clpP Streptococcus pneumoniae TIGR4

54.639

93.72

0.512
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

93.72

0.512
  clpP Streptococcus pneumoniae Rx1

54.639

93.72

0.512
  clpP Streptococcus pneumoniae D39

54.639

93.72

0.512
  clpP Streptococcus thermophilus LMD-9

54.404

93.237

0.507
  clpP Streptococcus thermophilus LMG 18311

54.404

93.237

0.507
  clpP Streptococcus pyogenes JRS4

54.737

91.787

0.502
  clpP Streptococcus pyogenes MGAS315

54.737

91.787

0.502
  clpP Streptococcus mutans UA159

53.368

93.237

0.498