Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO868_RS18295 Genome accession   NZ_AP026101
Coordinates   3581792..3582307 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 93_161312     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3576792..3587307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO868_RS18270 (CL8NIID93_35120) ygaZ 3577191..3577928 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  OO868_RS18275 (CL8NIID93_35130) ygaH 3577918..3578253 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  OO868_RS18280 (CL8NIID93_35140) emrR 3578344..3578874 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO868_RS18285 (CL8NIID93_35150) emrA 3579001..3580173 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO868_RS18290 (CL8NIID93_35160) emrB 3580190..3581728 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO868_RS18295 (CL8NIID93_35170) luxS 3581792..3582307 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  OO868_RS18300 (CL8NIID93_35180) gshA 3582457..3584013 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  OO868_RS18305 (CL8NIID93_35190) yqaA 3584086..3584514 (-) 429 WP_001287450.1 YqaA family protein -
  OO868_RS18310 (CL8NIID93_35200) yqaB 3584511..3585077 (-) 567 WP_000273311.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO868_RS18340 (CL8NIID93_35210) csrA 3586305..3586490 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=80100 OO868_RS18295 WP_001130215.1 3581792..3582307(-) (luxS) [Escherichia coli strain 93_161312]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=80100 OO868_RS18295 WP_001130215.1 3581792..3582307(-) (luxS) [Escherichia coli strain 93_161312]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment