Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN65_RS02315 Genome accession   NZ_CP133703
Coordinates   447155..448288 (+) Length   377 a.a.
NCBI ID   WP_251217767.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 442155..453288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS02285 (RFN65_02285) ywmC 442950..443633 (+) 684 WP_003227700.1 VWA domain-containing protein -
  RFN65_RS02290 (RFN65_02290) - 443764..443904 (+) 141 WP_015384887.1 hypothetical protein -
  RFN65_RS02295 (RFN65_02295) ywmD 443957..444631 (+) 675 WP_003243553.1 VWA domain-containing protein -
  RFN65_RS02300 (RFN65_02300) - 444726..444887 (+) 162 WP_100505927.1 hypothetical protein -
  RFN65_RS02305 (RFN65_02305) fdhD 445133..445921 (+) 789 WP_047183330.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  RFN65_RS02310 (RFN65_02310) moaA 445937..446962 (+) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  RFN65_RS02315 (RFN65_02315) rapC 447155..448288 (+) 1134 WP_251217767.1 response regulator aspartate phosphatase RapB Regulator
  RFN65_RS02320 (RFN65_02320) - 448444..448923 (+) 480 WP_015483813.1 hypothetical protein -
  RFN65_RS02325 (RFN65_02325) csbD 448996..449184 (+) 189 WP_251217766.1 stress response protein CsbD -
  RFN65_RS02330 (RFN65_02330) - 449405..449560 (+) 156 WP_250541129.1 ABC transporter substrate-binding protein -
  RFN65_RS02335 (RFN65_02335) - 449916..450038 (+) 123 WP_250540415.1 hypothetical protein -
  RFN65_RS02340 (RFN65_02340) ureA 450233..450550 (+) 318 WP_003227724.1 urease subunit gamma -
  RFN65_RS02345 (RFN65_02345) ureB 450547..450921 (+) 375 WP_003227726.1 urease subunit beta -
  RFN65_RS02350 (RFN65_02350) ureC 450918..452627 (+) 1710 WP_100505925.1 urease subunit alpha -
  RFN65_RS02355 (RFN65_02355) ywnA 452762..453163 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45031.23 Da        Isoelectric Point: 4.8493

>NTDB_id=800080 RFN65_RS02315 WP_251217767.1 447155..448288(+) (rapC) [Bacillus subtilis strain CP35]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKANDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGKLDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFNYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=800080 RFN65_RS02315 WP_251217767.1 447155..448288(+) (rapC) [Bacillus subtilis strain CP35]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGTCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTAATGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGTCTTGCTTTATTGG
AAGGACAGCCCCGCTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGAAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATACAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTAATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.133

99.469

0.419