Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P2C01_RS00200 Genome accession   NZ_CP119521
Coordinates   42476..43591 (+) Length   371 a.a.
NCBI ID   WP_275723298.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 37476..48591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS00180 rsmB 38409..39689 (-) 1281 WP_275723293.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P2C01_RS00185 fmt 39740..40687 (-) 948 WP_158141274.1 methionyl-tRNA formyltransferase -
  P2C01_RS00190 def 40706..41218 (-) 513 WP_004728778.1 peptide deformylase -
  P2C01_RS00195 - 41358..42476 (+) 1119 WP_275723297.1 LysM peptidoglycan-binding domain-containing protein -
  P2C01_RS00200 dprA 42476..43591 (+) 1116 WP_275723298.1 DNA-processing protein DprA Machinery gene
  P2C01_RS00205 - 43594..44070 (+) 477 WP_004728783.1 DUF494 family protein -
  P2C01_RS00210 - 44096..44674 (+) 579 WP_055466800.1 type I DNA topoisomerase -
  P2C01_RS00215 - 44708..45841 (-) 1134 WP_275723300.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  P2C01_RS00220 purE 45845..46330 (-) 486 WP_275723302.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  P2C01_RS00225 - 46528..47085 (+) 558 WP_014204147.1 L-threonylcarbamoyladenylate synthase -
  P2C01_RS00230 hemF 47105..48019 (+) 915 WP_004728793.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40637.41 Da        Isoelectric Point: 6.8088

>NTDB_id=799435 P2C01_RS00200 WP_275723298.1 42476..43591(+) (dprA) [Vibrio furnissii strain C1]
MLERDLAAWLAFSFAPQLGMHRLQRLASRHALHDLKQQLGREGEAAGLKAHQIHYLQQQADREVDACLLWCQQAEHRHIV
TPFHAHYPARLKEIAAAPPVLFVAGRLDTLCAPQIAIVGSRNASIDSQHIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLGCIYPARHRTLAERIMASGAVVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAVEQSREVFVVPGSIRHPNCHGSNQLIRQGACLVQHIDHILDEVGPMMDWSRNQSQPEQTELFSCSYHEEELPFPEL
LANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=799435 P2C01_RS00200 WP_275723298.1 42476..43591(+) (dprA) [Vibrio furnissii strain C1]
ATGCTAGAACGTGATCTGGCGGCGTGGCTGGCATTTAGCTTTGCCCCCCAATTGGGAATGCATCGCTTACAGCGTTTGGC
CAGCCGCCATGCGTTACATGATCTCAAACAACAGCTGGGTCGAGAAGGTGAAGCGGCCGGGCTCAAAGCCCATCAGATTC
ACTACCTACAGCAGCAAGCGGATCGTGAAGTTGATGCTTGCCTGCTTTGGTGTCAGCAAGCGGAACATCGCCACATCGTG
ACCCCATTTCATGCCCATTATCCGGCGCGATTAAAAGAGATTGCCGCGGCGCCTCCGGTGCTGTTTGTGGCCGGTCGACT
TGACACGCTGTGCGCGCCACAAATCGCGATTGTGGGCAGCCGCAATGCCAGTATCGACAGTCAACACATCGCTCATCAAT
TTGCTGCGCAACTGGTTGAGCATGGTTTGGTGGTCACCAGTGGGCTGGCGCTGGGCATCGATGGTTATGCCCATGATGGC
GCCTTGAAAGCGGGCGGCGAAACCATCGCGGTATTGGGTTCAGGGTTGGGATGTATTTATCCGGCGCGTCATCGCACGTT
GGCGGAGCGGATTATGGCTAGTGGGGCGGTGGTGTCGGAGTTTCGCCCGGATGCCAAACCGAGGCCTGATCACTTTCCGC
GTCGCAATCGTATTATTAGTGGCTTGTCGTTGGGTGTTCTGGTGGTGGAAGCGGCCGAGAAAAGTGGCTCGCTCATCACC
GCGCGTTACGCTGTTGAACAGAGCCGCGAGGTGTTTGTGGTCCCGGGCTCGATTCGTCATCCCAATTGTCATGGCAGTAA
CCAGTTGATTCGGCAAGGCGCGTGTCTGGTTCAGCACATCGACCACATACTCGATGAGGTTGGCCCCATGATGGATTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTTGCTCATATCACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGAAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCCATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.215

98.922

0.625
  dprA Vibrio cholerae strain A1552

61.725

100

0.617
  dprA Glaesserella parasuis strain SC1401

44.681

100

0.453
  dprA Legionella pneumophila strain ERS1305867

42.033

98.113

0.412
  dprA Neisseria meningitidis strain C311

35.872

100

0.394
  dprA Neisseria meningitidis MC58

35.872

100

0.394
  dprA Neisseria gonorrhoeae MS11

34.483

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

34.236

100

0.375