Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | RDV50_RS03655 | Genome accession | NZ_CP133462 |
| Coordinates | 756305..756763 (+) | Length | 152 a.a. |
| NCBI ID | WP_137040110.1 | Uniprot ID | Q462L4 |
| Organism | Neisseria subflava strain LMG 5313 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 751305..761763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDV50_RS03635 (RDV50_03635) | - | 752018..752314 (+) | 297 | WP_003680870.1 | helix-turn-helix domain-containing protein | - |
| RDV50_RS03640 (RDV50_03640) | glnD | 752334..754892 (+) | 2559 | WP_137040116.1 | [protein-PII] uridylyltransferase | - |
| RDV50_RS03645 (RDV50_03645) | - | 755316..755615 (+) | 300 | WP_137040114.1 | hypothetical protein | - |
| RDV50_RS03650 (RDV50_03650) | pilE | 755684..756190 (+) | 507 | WP_137040112.1 | pilin | Machinery gene |
| RDV50_RS03655 (RDV50_03655) | pilE | 756305..756763 (+) | 459 | WP_137040110.1 | pilin | Machinery gene |
| RDV50_RS03660 (RDV50_03660) | - | 757157..757639 (+) | 483 | WP_003684427.1 | Lrp/AsnC family transcriptional regulator | - |
| RDV50_RS03665 (RDV50_03665) | - | 757757..758353 (+) | 597 | WP_137040106.1 | DUF1415 domain-containing protein | - |
| RDV50_RS03670 (RDV50_03670) | - | 758368..758727 (+) | 360 | WP_003684291.1 | YbaN family protein | - |
| RDV50_RS03675 (RDV50_03675) | - | 759171..760589 (+) | 1419 | WP_137040104.1 | sodium:proton antiporter | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16185.89 Da Isoelectric Point: 8.9874
>NTDB_id=799292 RDV50_RS03655 WP_137040110.1 756305..756763(+) (pilE) [Neisseria subflava strain LMG 5313]
MKNLRKAQIGFSLIELMIVIGIIGILAVAALPAYQNYVARAQVAEGIMLAGSMKSYVEEAYADKGSLPLNLNIKQLASDD
NKVGNYVKIVRIEDNGTIVVAIGNQAAVPVKNTEIHLTPSFAKTGATKGTTVWSCGGTMDTQFLPVSCKQSL
MKNLRKAQIGFSLIELMIVIGIIGILAVAALPAYQNYVARAQVAEGIMLAGSMKSYVEEAYADKGSLPLNLNIKQLASDD
NKVGNYVKIVRIEDNGTIVVAIGNQAAVPVKNTEIHLTPSFAKTGATKGTTVWSCGGTMDTQFLPVSCKQSL
Nucleotide
Download Length: 459 bp
>NTDB_id=799292 RDV50_RS03655 WP_137040110.1 756305..756763(+) (pilE) [Neisseria subflava strain LMG 5313]
ATGAAAAACCTACGCAAAGCCCAAATCGGTTTTAGCCTGATTGAGTTGATGATTGTTATCGGCATCATCGGCATTTTGGC
GGTAGCAGCTCTTCCTGCATACCAAAACTATGTTGCCAGAGCACAAGTAGCAGAAGGCATCATGCTGGCAGGCAGTATGA
AAAGCTACGTCGAAGAGGCCTATGCAGATAAAGGCAGCTTGCCGCTTAACCTAAATATCAAGCAACTCGCTTCAGACGAC
AATAAAGTCGGTAACTATGTAAAGATTGTCCGTATTGAAGATAACGGCACTATTGTTGTCGCCATCGGTAATCAAGCTGC
TGTTCCTGTGAAGAATACTGAAATCCACCTGACACCAAGTTTTGCAAAAACAGGTGCTACTAAAGGCACAACAGTTTGGT
CTTGCGGTGGCACCATGGATACACAATTCCTTCCTGTATCCTGCAAACAGAGCCTGTAA
ATGAAAAACCTACGCAAAGCCCAAATCGGTTTTAGCCTGATTGAGTTGATGATTGTTATCGGCATCATCGGCATTTTGGC
GGTAGCAGCTCTTCCTGCATACCAAAACTATGTTGCCAGAGCACAAGTAGCAGAAGGCATCATGCTGGCAGGCAGTATGA
AAAGCTACGTCGAAGAGGCCTATGCAGATAAAGGCAGCTTGCCGCTTAACCTAAATATCAAGCAACTCGCTTCAGACGAC
AATAAAGTCGGTAACTATGTAAAGATTGTCCGTATTGAAGATAACGGCACTATTGTTGTCGCCATCGGTAATCAAGCTGC
TGTTCCTGTGAAGAATACTGAAATCCACCTGACACCAAGTTTTGCAAAAACAGGTGCTACTAAAGGCACAACAGTTTGGT
CTTGCGGTGGCACCATGGATACACAATTCCTTCCTGTATCCTGCAAACAGAGCCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.365 |
100 |
0.401 |
| pilE | Neisseria gonorrhoeae MS11 |
37.888 |
100 |
0.401 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
32 |
100 |
0.368 |
| pilA | Pseudomonas aeruginosa PAK |
35 |
100 |
0.368 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.032 |
100 |
0.362 |