Detailed information NTG0799294

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P0M07_RS20275
• Genome accession: NZ_CP119431
• Coordinates: 4298400..4299275 (+)
• Length: 291 a.a.
• NCBI ID: WP_201926360.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain K523
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4293400..4304275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P0M07_RS20255 (P0M07_20295)	nadC	4293641..4294504 (+)	864	WP_102949048.1	carboxylating nicotinate-nucleotide diphosphorylase	-
P0M07_RS20260 (P0M07_20300)	-	4294815..4295243 (+)	429	WP_102949047.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
P0M07_RS20265 (P0M07_20305)	pilB	4295247..4296953 (+)	1707	WP_407161101.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
P0M07_RS20270 (P0M07_20310)	pilC	4297081..4298322 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
P0M07_RS20275 (P0M07_20315)	pilD	4298400..4299275 (+)	876	WP_201926360.1	A24 family peptidase	Machinery gene
P0M07_RS20280 (P0M07_20320)	coaE	4299294..4299908 (+)	615	WP_324038184.1	dephospho-CoA kinase	-
P0M07_RS20285 (P0M07_20325)	zapD	4299946..4300668 (+)	723	WP_010675825.1	cell division protein ZapD	-
P0M07_RS20290 (P0M07_20330)	yacG	4300679..4300873 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
P0M07_RS20295 (P0M07_20335)	mutT	4300929..4301333 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
P0M07_RS20300 (P0M07_20340)	-	4301342..4302526 (-)	1185	WP_407161102.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32053.15 Da
• Isoelectric Point: 6.8280

>NTDB_id=799294 P0M07_RS20275 WP_201926360.1 4298400..4299275(+) (pilD) [Aeromonas caviae strain K523]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALSPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=799294 P0M07_RS20275 WP_201926360.1 4298400..4299275(+) (pilD) [Aeromonas caviae strain K523]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTTCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTACCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46