Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   PZ893_RS13650 Genome accession   NZ_CP119300
Coordinates   2658902..2659483 (-) Length   193 a.a.
NCBI ID   WP_001092372.1    Uniprot ID   A0A9W5R6W8
Organism   Bacillus cereus strain M72-4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2653902..2664483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ893_RS13615 (PZ893_13615) - 2653919..2654755 (-) 837 WP_000556966.1 PP2C family serine/threonine-protein phosphatase -
  PZ893_RS13620 (PZ893_13620) - 2654739..2655052 (-) 314 Protein_2611 hypothetical protein -
  PZ893_RS13625 (PZ893_13625) - 2655144..2655311 (-) 168 WP_000508401.1 hypothetical protein -
  PZ893_RS13630 (PZ893_13630) - 2655529..2655741 (+) 213 WP_065382618.1 hypothetical protein -
  PZ893_RS13635 (PZ893_13635) - 2655795..2656631 (-) 837 WP_001084765.1 ABC transporter permease -
  PZ893_RS13640 (PZ893_13640) - 2656624..2657829 (-) 1206 WP_000370606.1 quaternary amine ABC transporter ATP-binding protein -
  PZ893_RS13645 (PZ893_13645) - 2658001..2658858 (+) 858 WP_072770038.1 glycine betaine ABC transporter substrate-binding protein -
  PZ893_RS13650 (PZ893_13650) clpP 2658902..2659483 (-) 582 WP_001092372.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  PZ893_RS13655 (PZ893_13655) - 2659505..2660191 (-) 687 WP_072770037.1 RNA polymerase subunit sigma-70 -
  PZ893_RS13660 (PZ893_13660) - 2660334..2660654 (+) 321 WP_001125388.1 2Fe-2S iron-sulfur cluster-binding protein -
  PZ893_RS13665 (PZ893_13665) rpiA 2660659..2661321 (+) 663 WP_001049991.1 ribose 5-phosphate isomerase A -
  PZ893_RS13670 (PZ893_13670) - 2661433..2661867 (+) 435 WP_065382634.1 GNAT family N-acetyltransferase -
  PZ893_RS13675 (PZ893_13675) - 2661994..2663361 (-) 1368 WP_072770036.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21238.47 Da        Isoelectric Point: 5.0776

>NTDB_id=798352 PZ893_RS13650 WP_001092372.1 2658902..2659483(-) (clpP) [Bacillus cereus strain M72-4]
MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=798352 PZ893_RS13650 WP_001092372.1 2658902..2659483(-) (clpP) [Bacillus cereus strain M72-4]
ATGAATACAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAACGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATATTTATACATCAATAGCCCAGGAGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGACGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.725

97.927

0.663
  clpP Streptococcus pyogenes JRS4

56.614

97.927

0.554
  clpP Streptococcus pyogenes MGAS315

56.614

97.927

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

97.927

0.497