Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PY247_RS07120 Genome accession   NZ_CP119223
Coordinates   1507229..1509406 (+) Length   725 a.a.
NCBI ID   WP_159723957.1    Uniprot ID   A0A653K726
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502229..1514406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS07100 (PY247_07100) comM 1504250..1505308 (+) 1059 WP_004657415.1 pilus assembly protein PilM Machinery gene
  PY247_RS07105 (PY247_07105) pilN 1505308..1505958 (+) 651 WP_159723954.1 PilN domain-containing protein Machinery gene
  PY247_RS07110 (PY247_07110) - 1505955..1506681 (+) 727 Protein_1372 type 4a pilus biogenesis protein PilO -
  PY247_RS07115 (PY247_07115) pilP 1506685..1507212 (+) 528 WP_159723956.1 pilus assembly protein PilP Machinery gene
  PY247_RS07120 (PY247_07120) pilQ 1507229..1509406 (+) 2178 WP_159723957.1 type IV pilus secretin PilQ Machinery gene
  PY247_RS07125 (PY247_07125) aroK 1509426..1509983 (+) 558 WP_004657425.1 shikimate kinase AroK -
  PY247_RS07130 (PY247_07130) aroB 1510008..1511090 (+) 1083 WP_159723958.1 3-dehydroquinate synthase -
  PY247_RS07135 (PY247_07135) - 1511110..1511972 (+) 863 Protein_1377 hypothetical protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78836.68 Da        Isoelectric Point: 7.3192

>NTDB_id=798217 PY247_RS07120 WP_159723957.1 1507229..1509406(+) (pilQ) [Acinetobacter proteolyticus strain AP54]
MKKQFKDSLFGEAKTMNHAFRQFSMGAIAIAVMQVASAQVSMTNIVPMSLGDQGTEIRVMFNGLPPQPQAYQLEQPARLI
LDFDKAQQGLKQNSIPVSTAEASSIEVASDDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPAAANAPSVAARQVQQG
VSNIGFQRGNQGEGLVVIDLLGNNTPVDVQQQGSKIVVRTAGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQS
AGSYEYMAYQAENKLTISLKRPVDNSPTKAKAQAYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIAQSVKLAPIQTEYIKLSYSKAADILKLIEDSRDSKG
ASANRTTNTDSLALESLLSSRGSAVADTRTNTLIINDTAQNIDKIRRMVDLLDVSVKQVMIEARIVSASTDFTREMGVKW
GILSQGIAKNNDLLVGGSDQTLWDLRKPTKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAV
QADGYGEVISTPKVMTADKQPAKIESGKKIPYTSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSQST
PTPTGQLTINKNQIDTNVLVDNGETVVLGGIFEQENITSQVKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDT
LTRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=798217 PY247_RS07120 WP_159723957.1 1507229..1509406(+) (pilQ) [Acinetobacter proteolyticus strain AP54]
ATGAAAAAACAGTTTAAAGATTCTTTATTTGGGGAAGCGAAGACCATGAATCATGCATTCCGTCAATTTTCTATGGGTGC
GATTGCGATTGCGGTGATGCAAGTGGCATCAGCGCAAGTGAGTATGACCAATATCGTACCAATGAGTTTGGGTGATCAGG
GCACGGAAATTCGTGTCATGTTTAATGGCCTTCCCCCACAACCACAAGCTTATCAACTTGAACAACCTGCTCGTTTGATT
TTGGATTTTGATAAGGCACAACAGGGTCTAAAGCAAAATTCAATTCCAGTCTCAACTGCTGAAGCAAGTTCAATTGAGGT
TGCATCTGATGATCAACGCTCTCGTGTCATTGTAAATTTAAAAGATGCGGGTGCGTTTACCACACGGGTTGAAGGTAATA
CCTTTGTGCTGAAAATTAATTCAGCCAAACCCGCTGCAGCGAATGCACCGTCAGTTGCTGCACGTCAAGTACAGCAAGGT
GTTTCTAATATTGGTTTCCAACGAGGCAATCAAGGCGAAGGTCTGGTTGTTATTGATTTGCTGGGGAATAACACCCCTGT
GGATGTACAACAACAAGGCAGTAAAATTGTGGTGCGTACAGCAGGGAATAAAATTCCAACGCATTTAGCCCGTCGTTTAA
ATACCAATGATTTTGCAACTCCTGTTGCCAGCATTGACGCCTATAATGATAAAGGCAATGGCGTGATTACCATTCAATCT
GCAGGCAGCTATGAATATATGGCTTATCAGGCAGAGAATAAGCTGACTATTAGTTTGAAACGTCCTGTTGATAATTCCCC
AACCAAAGCCAAGGCACAAGCTTATACTGGCAATAAAATCTCTTTAGATTTTCAGGATATTGAAGTGCGCCGTGTCTTAC
AGTTGTTGGCTGATTTTACTGGTATTAATATGGTGGCAGCGGATACCGTACAAGGTAATATTACCCTGCGCCTTAAAGAT
GTGCCTTGGGATCAGGCCCTCGATATTGTACTCAAAACTAAAAATCTGGATAAACGCCGTAATGGCAATGTGATCTGGAT
TGCACCAGTGACTGAATTGATTAAAGCGGAAGAAGAAGAGGCGAAAGCAATTGCACAAAGTGTAAAATTGGCACCGATTC
AAACGGAATATATCAAATTAAGTTATTCCAAAGCTGCTGATATCTTAAAATTGATTGAGGATTCTCGTGATAGTAAAGGA
GCCTCTGCAAATAGAACAACAAATACAGACTCTTTAGCTTTAGAAAGCTTATTGAGTTCACGTGGTAGTGCAGTGGCCGA
TACCCGTACTAATACTTTGATTATTAATGATACCGCCCAGAATATTGATAAAATCCGTAGAATGGTAGATTTATTAGATG
TTTCAGTTAAGCAGGTGATGATTGAAGCACGGATTGTTAGTGCCAGTACTGATTTTACCCGAGAGATGGGAGTGAAATGG
GGAATCTTGTCTCAAGGGATTGCCAAGAACAATGATTTGTTGGTGGGAGGGAGTGATCAGACCTTGTGGGATTTAAGAAA
GCCAACTAAAGACAGTGACACAGGTGGCTGGAAATATGAGATTGAACGTCCGGATAACCTGAATGTTGATTTAGGTGCAG
TTACGCCTGGGGCGAGTCGTATTGCTTTCGGTTTGATCAGTCTTTCCGACTTTATGTTGGATTTGGAGTTGTCTGCAGTA
CAGGCCGATGGTTATGGGGAAGTGATTTCAACGCCAAAAGTGATGACGGCAGATAAGCAACCTGCAAAAATTGAATCAGG
TAAGAAAATTCCTTATACCTCATCGACTGGTGGGGGAGCGAATGCCGTCCCTAAAACAGAGTTTATTGATGCAACCTTAA
GTCTAGATGTTACTCCAAGCATTACCCCTGAAGGTAAAGTCATGATGAAGCTGAACATTACCAAAGACTCACAAAGTACG
CCGACACCGACGGGTCAACTTACCATCAATAAAAATCAAATTGATACCAATGTATTGGTCGATAATGGTGAAACAGTGGT
TCTAGGCGGTATTTTTGAGCAGGAAAATATCACTTCTCAGGTGAAAGTCCCTTTCTTGGGCGACCTACCATATGTGGGGC
GGCTATTCCGTCGTGACCTTAAAACCGATAATAAACGCGAACTGCTTATTTTTGTGACACCGAGAATTGTTAATGACACT
TTGACTAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-458)

Bacterial type II and III secretion system protein (Secretin)

(559-717)

AMIN domain (AMIN)

(52-135)

Secretin and TonB N terminus short domain (STN)

(307-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653K726

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.586

99.862

0.745
  pilQ Acinetobacter baumannii strain A118

74.448

99.862

0.743
  comQ Acinetobacter baylyi ADP1

70.319

99.448

0.699
  pilQ Pseudomonas aeruginosa PAK

41.667

96

0.4