Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PY247_RS07115 Genome accession   NZ_CP119223
Coordinates   1506685..1507212 (+) Length   175 a.a.
NCBI ID   WP_159723956.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501685..1512212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS07100 (PY247_07100) comM 1504250..1505308 (+) 1059 WP_004657415.1 pilus assembly protein PilM Machinery gene
  PY247_RS07105 (PY247_07105) pilN 1505308..1505958 (+) 651 WP_159723954.1 PilN domain-containing protein Machinery gene
  PY247_RS07110 (PY247_07110) - 1505955..1506681 (+) 727 Protein_1372 type 4a pilus biogenesis protein PilO -
  PY247_RS07115 (PY247_07115) pilP 1506685..1507212 (+) 528 WP_159723956.1 pilus assembly protein PilP Machinery gene
  PY247_RS07120 (PY247_07120) pilQ 1507229..1509406 (+) 2178 WP_159723957.1 type IV pilus secretin PilQ Machinery gene
  PY247_RS07125 (PY247_07125) aroK 1509426..1509983 (+) 558 WP_004657425.1 shikimate kinase AroK -
  PY247_RS07130 (PY247_07130) aroB 1510008..1511090 (+) 1083 WP_159723958.1 3-dehydroquinate synthase -
  PY247_RS07135 (PY247_07135) - 1511110..1511972 (+) 863 Protein_1377 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19244.41 Da        Isoelectric Point: 9.3319

>NTDB_id=798216 PY247_RS07115 WP_159723956.1 1506685..1507212(+) (pilP) [Acinetobacter proteolyticus strain AP54]
MNNYKLLLSFLIGAGLVGCDSRIDAVNQKMADIRNQPPLPIEPAPVFTPVPLFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTSDTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=798216 PY247_RS07115 WP_159723956.1 1506685..1507212(+) (pilP) [Acinetobacter proteolyticus strain AP54]
ATGAATAATTATAAATTACTATTGAGTTTCTTGATTGGAGCCGGATTGGTAGGGTGTGATTCACGTATAGATGCAGTGAA
TCAAAAGATGGCTGACATTCGTAATCAGCCACCATTGCCAATTGAGCCTGCCCCTGTATTTACACCAGTCCCTTTGTTTA
ACTATGCAGCTCATCAGCTTAAAAGTCCGTTTATGCCAAGTTCTCTGGCAGCTGAGTTAAAGATTATGGCGGGGAAACGG
GTTTATCCGAACTTTAATCGCCAGCCACAACCTTTAGAAAGTTATGCGCTGGAATCGTTGAACATGAAGGGCAGCATGCG
CGGTAAAACCAGCGATACGATTGCACTGATTCAAACTCCAGACGGTCAAATTGAGCGAGTGCAGGTCGGAAGTTATTTGG
GGATGAATCAAGGGCGTATTATTAAAATTAGCCCAACTCAAATCGATTTGGTCGAAATTGTACCTGATGGTCGTGAAGGT
TATGTCGAGAGACCTCGTACACTCGTTCTAATTGGACCAGCACCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

82.857

100

0.829
  comL Acinetobacter baylyi ADP1

72.571

100

0.726