Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   L6495_RS13700 Genome accession   NZ_AP022903
Coordinates   2659607..2660188 (-) Length   193 a.a.
NCBI ID   WP_236788563.1    Uniprot ID   -
Organism   Bacillus cereus strain MRY14-0079     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2657327..2669842 2659607..2660188 within 0


Gene organization within MGE regions


Location: 2657327..2669842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6495_RS13690 (BCM0079_2692) - 2657327..2658532 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  L6495_RS13695 (BCM0079_2693) - 2658704..2659561 (+) 858 WP_062921274.1 glycine betaine ABC transporter substrate-binding protein -
  L6495_RS13700 (BCM0079_2694) clpP 2659607..2660188 (-) 582 WP_236788563.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  L6495_RS13705 (BCM0079_2695) - 2660210..2660896 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  L6495_RS13710 (BCM0079_2696) - 2661040..2661360 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  L6495_RS13715 (BCM0079_2697) rpiA 2661365..2662027 (+) 663 WP_000364536.1 ribose 5-phosphate isomerase A -
  L6495_RS13720 (BCM0079_2698) - 2662135..2662569 (+) 435 WP_236788564.1 GNAT family N-acetyltransferase -
  L6495_RS13725 (BCM0079_2699) - 2662700..2664067 (-) 1368 WP_236788573.1 lytic polysaccharide monooxygenase -
  L6495_RS13730 (BCM0079_2700) - 2664504..2665022 (-) 519 WP_000720568.1 DNA topology modulation protein -
  L6495_RS13735 - 2665019..2665947 (-) 929 Protein_2643 phosphotransferase -
  L6495_RS13740 (BCM0079_2703) - 2665963..2666358 (-) 396 WP_087931911.1 DUF2809 domain-containing protein -
  L6495_RS13745 (BCM0079_2704) - 2666424..2667131 (-) 708 WP_236788575.1 class I SAM-dependent methyltransferase -
  L6495_RS13750 (BCM0079_2705) - 2667153..2667506 (-) 354 WP_078438476.1 MmcQ/YjbR family DNA-binding protein -
  L6495_RS13755 (BCM0079_2706) - 2667508..2667927 (-) 420 WP_236788576.1 GNAT family N-acetyltransferase -
  L6495_RS13760 (BCM0079_2707) - 2668186..2668662 (+) 477 Protein_2648 S-layer homology domain-containing protein -
  L6495_RS13765 (BCM0079_2708) - 2668758..2668970 (+) 213 WP_000820170.1 DUF3006 domain-containing protein -
  L6495_RS13770 (BCM0079_2709) - 2669036..2669842 (-) 807 WP_236788577.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=79805 L6495_RS13700 WP_236788563.1 2659607..2660188(-) (clpP) [Bacillus cereus strain MRY14-0079]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDIVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=79805 L6495_RS13700 WP_236788563.1 2659607..2660188(-) (clpP) [Bacillus cereus strain MRY14-0079]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCAAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATCAAACCCGACGTGCAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATATTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492

Multiple sequence alignment