Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   L6477_RS13615 Genome accession   NZ_AP022886
Coordinates   2629866..2630447 (-) Length   193 a.a.
NCBI ID   WP_000991624.1    Uniprot ID   -
Organism   Bacillus cereus strain MRY14-0074     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624866..2635447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6477_RS13580 (BCM0074_2659) - 2624945..2625385 (-) 441 WP_000841910.1 NUDIX hydrolase -
  L6477_RS13585 - 2625447..2625808 (-) 362 Protein_2611 DUF4181 domain-containing protein -
  L6477_RS13590 (BCM0074_2661) - 2625826..2626158 (-) 333 Protein_2612 protein phosphatase 2C domain-containing protein -
  L6477_RS13595 (BCM0074_2662) - 2626292..2626459 (-) 168 WP_002053336.1 hypothetical protein -
  L6477_RS13600 (BCM0074_2663) - 2626757..2627593 (-) 837 WP_001059838.1 proline/glycine betaine ABC transporter permease -
  L6477_RS13605 (BCM0074_2664) - 2627586..2628791 (-) 1206 WP_236797093.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  L6477_RS13610 (BCM0074_2665) - 2628963..2629820 (+) 858 WP_061682198.1 glycine betaine ABC transporter substrate-binding protein -
  L6477_RS13615 (BCM0074_2666) clpP 2629866..2630447 (-) 582 WP_000991624.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  L6477_RS13620 (BCM0074_2667) - 2630469..2631155 (-) 687 WP_078383648.1 RNA polymerase subunit sigma-70 -
  L6477_RS13625 (BCM0074_2668) - 2631298..2631618 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  L6477_RS13630 (BCM0074_2669) rpiA 2631623..2632285 (+) 663 Protein_2620 ribose 5-phosphate isomerase A -
  L6477_RS13635 (BCM0074_2670) - 2632393..2632827 (+) 435 WP_000555725.1 GNAT family N-acetyltransferase -
  L6477_RS13640 (BCM0074_2671) - 2632958..2634325 (-) 1368 WP_078383650.1 lytic polysaccharide monooxygenase -
  L6477_RS13645 (BCM0074_2672) - 2634763..2635281 (-) 519 WP_061531204.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21250.48 Da        Isoelectric Point: 4.9174

>NTDB_id=79755 L6477_RS13615 WP_000991624.1 2629866..2630447(-) (clpP) [Bacillus cereus strain MRY14-0074]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTEQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=79755 L6477_RS13615 WP_000991624.1 2629866..2630447(-) (clpP) [Bacillus cereus strain MRY14-0074]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGAGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539
  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539
  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539
  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539
  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539
  clpP Streptococcus mutans UA159

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487

Multiple sequence alignment