Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PXX05_RS06045 Genome accession   NZ_CP119078
Coordinates   1401585..1402799 (+) Length   404 a.a.
NCBI ID   WP_275090164.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396585..1407799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS06025 (PXX05_06025) - 1397501..1398715 (-) 1215 WP_275090160.1 MFS transporter -
  PXX05_RS06030 (PXX05_06030) - 1398717..1399466 (-) 750 WP_275090161.1 methyltransferase domain-containing protein -
  PXX05_RS06035 (PXX05_06035) - 1399549..1399782 (-) 234 WP_275090162.1 hypothetical protein -
  PXX05_RS06040 (PXX05_06040) pilB 1399889..1401577 (+) 1689 WP_275090163.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PXX05_RS06045 (PXX05_06045) pilC 1401585..1402799 (+) 1215 WP_275090164.1 type II secretion system F family protein Machinery gene
  PXX05_RS06050 (PXX05_06050) - 1402805..1403671 (+) 867 WP_275090165.1 prepilin peptidase -
  PXX05_RS06055 (PXX05_06055) - 1403752..1404546 (+) 795 WP_275090166.1 F-box protein -
  PXX05_RS06060 (PXX05_06060) - 1404536..1405435 (-) 900 WP_275090167.1 aminoglycoside phosphotransferase family protein -
  PXX05_RS06065 (PXX05_06065) - 1405540..1406127 (-) 588 WP_275090168.1 hypothetical protein -
  PXX05_RS06070 (PXX05_06070) - 1406137..1406598 (-) 462 WP_275090169.1 hypothetical protein -
  PXX05_RS06075 (PXX05_06075) ppsR 1406836..1407651 (+) 816 WP_275090170.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 45345.15 Da        Isoelectric Point: 10.1430

>NTDB_id=797542 PXX05_RS06045 WP_275090164.1 1401585..1402799(+) (pilC) [Legionella cardiaca strain H63]
MTKKHKTLRYFWKGIDLHGRQVRGEINAPNLLYAKFELQKQGINVEKIRKHYALLSNPFNQITSADIAIFSRQMATMIEA
GIPLMHAFDIIMKGQIKQQMNVLIAAIKRDIEIGSTFAGALAKYPTLFNHLFCSLIEAGEKSGSLILMLNRVANYQEKLE
TVRKKIRKLLMYPSVVFIIALLITTGLLIFVIPQFSTMFKAFGAELPLLTRSVMNASIFLQNYWCLLFALLVGATVGLPQ
ARKNSVTFTRYLDIFLLKLPWIGPVILKTIIARFTRTLGITLTAGLPLLQALQAAVNVTANRVYHLAGIRMQETIARGQS
IQYALENTALFPAMVVQMIAIGEQSGTLEQMLNKIADYYEEEIDNTIESFNILLEPLIMSILGIVVGVLLLAMYIPIFKL
GSIM

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=797542 PXX05_RS06045 WP_275090164.1 1401585..1402799(+) (pilC) [Legionella cardiaca strain H63]
ATGACTAAAAAGCACAAAACTCTTCGGTATTTCTGGAAAGGAATTGATCTGCATGGCCGACAAGTCAGAGGCGAAATTAA
TGCGCCTAATCTCCTCTATGCAAAATTTGAACTACAAAAGCAGGGCATTAACGTAGAGAAAATTCGCAAACATTATGCTT
TACTAAGTAATCCATTTAACCAAATTACCTCAGCTGATATTGCCATTTTCAGCCGACAAATGGCTACCATGATAGAAGCA
GGCATCCCGCTTATGCACGCTTTTGATATAATTATGAAGGGTCAAATTAAACAGCAAATGAATGTTCTAATTGCAGCAAT
CAAGAGAGATATTGAAATTGGATCTACTTTTGCCGGCGCTTTAGCTAAATACCCTACCCTTTTTAATCATTTGTTTTGTA
GTCTTATTGAGGCGGGAGAAAAATCTGGCTCTCTCATACTAATGCTAAATCGCGTAGCTAATTATCAAGAAAAATTAGAA
ACCGTACGCAAGAAAATCAGAAAGCTATTAATGTATCCTAGCGTTGTATTCATTATAGCGCTTCTTATTACAACAGGACT
TTTAATTTTTGTCATTCCTCAGTTCTCTACAATGTTCAAAGCGTTTGGAGCAGAGCTCCCTTTATTAACTCGTAGCGTAA
TGAACGCATCTATTTTTTTACAAAACTATTGGTGCTTGCTATTCGCATTGCTTGTTGGTGCAACTGTAGGACTACCACAG
GCCAGAAAAAATTCTGTAACCTTTACCAGGTATCTCGATATTTTTTTGCTAAAGCTACCCTGGATTGGCCCTGTCATTTT
AAAAACAATTATTGCTCGTTTTACGCGTACTTTAGGCATTACACTGACCGCAGGTCTTCCTTTGTTGCAGGCTTTACAGG
CTGCAGTAAATGTTACTGCTAATCGTGTTTATCATCTAGCCGGTATTCGCATGCAAGAAACGATTGCAAGAGGACAATCC
ATACAATACGCCCTGGAAAATACCGCTTTATTTCCCGCAATGGTTGTACAAATGATTGCTATTGGTGAACAATCAGGCAC
TTTGGAGCAGATGCTAAATAAAATTGCTGATTATTATGAAGAAGAAATAGATAATACAATTGAATCTTTTAATATTTTGC
TGGAACCACTTATCATGTCAATATTAGGCATTGTGGTGGGTGTTTTATTGCTTGCCATGTATATCCCGATTTTTAAACTT
GGTTCTATCATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.768

98.02

0.507
  pilC Acinetobacter baylyi ADP1

43.873

100

0.443
  pilC Acinetobacter baumannii D1279779

43.577

98.267

0.428
  pilC Pseudomonas stutzeri DSM 10701

41.542

99.505

0.413
  pilC Vibrio cholerae strain A1552

38.889

98.02

0.381
  pilG Neisseria gonorrhoeae MS11

36.634

100

0.366
  pilG Neisseria meningitidis 44/76-A

36.386

100

0.364