Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PY770_RS04755 Genome accession   NZ_CP118925
Coordinates   933875..935113 (-) Length   412 a.a.
NCBI ID   WP_275045826.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928875..940113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY770_RS04745 (PY770_04745) - 931279..932085 (-) 807 WP_139562212.1 TIGR00282 family metallophosphoesterase -
  PY770_RS04750 (PY770_04750) rny 932171..933730 (-) 1560 WP_139554804.1 ribonuclease Y -
  PY770_RS04755 (PY770_04755) cinA 933875..935113 (-) 1239 WP_275045826.1 competence/damage-inducible protein A Machinery gene
  PY770_RS04760 (PY770_04760) pgsA 935132..935719 (-) 588 WP_041817852.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PY770_RS04765 (PY770_04765) - 935790..936674 (-) 885 WP_163600875.1 helix-turn-helix domain-containing protein -
  PY770_RS04770 (PY770_04770) yfmH 936745..938028 (-) 1284 WP_225362109.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PY770_RS04775 (PY770_04775) yfmF 938018..939280 (-) 1263 WP_056957475.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45028.45 Da        Isoelectric Point: 4.7371

>NTDB_id=796381 PY770_RS04755 WP_275045826.1 933875..935113(-) (cinA) [Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4]
MNAEIITVGTEILLGEIVDTSSAFIARRLANLGIDVYFEDTVGDNYDRLESTISLAESRSDLVVLTGGLGPTEDDITKIS
LAQHLGLDLEIDKKALKKINDFYATYALGKPSNADMMAKHIEGAEILPNEKGFAVGMFLKTDACDYLVLPGPPVEMRYMF
TNFAMPKLAKLTSGSSLIDSRVLRFFGIGETELEKDLKELIDNQTNPTLATYAKCNEVTLRITASGETKSEIKELIDNME
KRVLAIVGQYFYGYGDNNSLEKVVVNLLKNKELSITAAESLTSGMFQSRIGNVSGASEVFPGGFVTYSADAKEQLLNIPT
EIIKKYGVVSSETAEYMAKNSKDKMKTDIGVSFTGVAGPDSLEGHLAGFFWVGLALPNGQVITKSVNFAKARNEVRDYAT
KTGFKLIYDNLK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=796381 PY770_RS04755 WP_275045826.1 933875..935113(-) (cinA) [Fructilactobacillus sanfranciscensis strain SPC-SNU-70-4]
ATGAATGCAGAAATAATTACTGTTGGAACAGAAATTTTACTTGGTGAAATTGTTGATACTAGTTCAGCATTTATTGCCAG
AAGATTAGCTAATCTCGGAATTGATGTTTATTTTGAAGACACAGTTGGTGATAATTATGATCGTTTAGAGTCAACTATCA
GTTTGGCCGAAAGTCGGAGTGATTTAGTTGTTTTAACCGGAGGACTTGGTCCAACGGAAGATGACATTACAAAAATATCT
TTGGCACAACATTTAGGACTAGATTTAGAAATTGATAAAAAGGCATTAAAAAAAATTAATGATTTCTATGCAACATATGC
TCTTGGAAAACCAAGCAATGCTGATATGATGGCTAAACACATTGAAGGCGCTGAAATCTTACCAAATGAAAAAGGTTTTG
CTGTCGGAATGTTTTTAAAAACTGACGCATGTGATTATTTGGTATTACCAGGGCCACCAGTAGAAATGCGATATATGTTT
ACTAATTTTGCTATGCCAAAATTAGCTAAATTAACCAGCGGTAGTTCATTAATTGACTCACGCGTACTTCGTTTCTTTGG
AATTGGCGAAACTGAATTAGAAAAGGATTTAAAAGAACTAATTGATAATCAAACTAATCCAACCCTTGCAACTTACGCTA
AATGTAATGAAGTAACTCTTCGAATCACTGCTAGTGGAGAAACTAAGTCTGAGATTAAAGAATTAATTGACAACATGGAA
AAGCGTGTCTTAGCGATTGTTGGTCAATATTTCTATGGTTACGGAGATAATAACTCCCTTGAAAAAGTTGTAGTTAATTT
GTTAAAAAACAAAGAATTATCAATTACAGCTGCAGAATCATTAACAAGTGGAATGTTCCAAAGTCGGATTGGAAATGTTT
CAGGAGCGTCTGAGGTATTCCCAGGTGGCTTCGTAACTTATTCTGCCGATGCTAAAGAACAATTATTGAATATTCCAACT
GAGATAATTAAAAAATACGGGGTTGTTTCTTCTGAAACTGCCGAATATATGGCAAAGAATTCCAAAGATAAAATGAAAAC
TGATATTGGGGTTTCATTTACTGGGGTTGCTGGACCAGATAGTTTAGAAGGACATCTTGCTGGATTTTTCTGGGTTGGTT
TAGCGTTACCAAATGGTCAAGTAATTACTAAAAGTGTTAACTTTGCAAAAGCGAGAAATGAAGTTCGTGATTATGCAACT
AAGACAGGATTTAAATTAATATATGACAATTTAAAGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.991

100

0.493
  cinA Streptococcus mitis NCTC 12261

47.991

100

0.493
  cinA Streptococcus pneumoniae Rx1

46.793

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.793

100

0.478
  cinA Streptococcus pneumoniae R6

46.793

100

0.478
  cinA Streptococcus pneumoniae D39

46.556

100

0.476
  cinA Streptococcus mutans UA159

46.377

100

0.466
  cinA Bacillus subtilis subsp. subtilis str. 168

43.21

98.301

0.425