Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYW03_RS08455 Genome accession   NZ_CP118872
Coordinates   1820230..1821297 (+) Length   355 a.a.
NCBI ID   WP_003252365.1    Uniprot ID   I7B6K4
Organism   Pseudomonas putida strain KT2440     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815230..1826297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW03_RS08435 fdxA 1815299..1815622 (-) 324 WP_003252355.1 ferredoxin FdxA -
  PYW03_RS08440 mutS 1815763..1818336 (-) 2574 WP_010952693.1 DNA mismatch repair protein MutS -
  PYW03_RS08445 - 1818521..1819588 (+) 1068 WP_049588159.1 hypothetical protein -
  PYW03_RS08450 - 1819644..1820126 (+) 483 WP_010952695.1 CinA family protein -
  PYW03_RS08455 recA 1820230..1821297 (+) 1068 WP_003252365.1 recombinase RecA Machinery gene
  PYW03_RS08460 recX 1821319..1821789 (+) 471 WP_010952696.1 recombination regulator RecX -
  PYW03_RS08465 - 1822066..1823184 (-) 1119 WP_010952697.1 LOG family protein -
  PYW03_RS08470 - 1823345..1823554 (+) 210 WP_020193312.1 hypothetical protein -
  PYW03_RS08475 - 1823569..1823988 (-) 420 WP_003252372.1 quorum-sensing-regulated virulence factor family protein -
  PYW03_RS08480 - 1824205..1824915 (+) 711 WP_003252373.1 tRNA-uridine aminocarboxypropyltransferase -
  PYW03_RS08485 erdR 1825095..1825745 (+) 651 WP_010952699.1 response regulator transcription factor ErdR -
  PYW03_RS08490 - 1825819..1826184 (+) 366 WP_010952700.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37544.89 Da        Isoelectric Point: 5.3228

>NTDB_id=795996 PYW03_RS08455 WP_003252365.1 1820230..1821297(+) (recA) [Pseudomonas putida strain KT2440]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLKAGAAAEAGKAAAAEADADDMADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=795996 PYW03_RS08455 WP_003252365.1 1820230..1821297(+) (recA) [Pseudomonas putida strain KT2440]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGTGACCATGAGCGTCAAGGCATTCCGGCCATCTCCACCGGCTCGCTGGGGCTGGATATCGCCCTGGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCTGTCATCGCT
GAAGCGCAAAAGAACGGTGCTACCTGCGCCTTCGTCGACGCCGAACATGCCCTTGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAGGCCCTTGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATTGTCGACTCCGTTGCCGCGCTGGTACCGAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCATGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGTAAGATCACCGGTAACATCAAGAACGCGAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCCC
TGAAGTTCTATGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCTCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGGAAAGGTAT
CTACCGTAACGGCGAGATCATTGATCTGGGGGTATCTCAGGGCCTGGTCGAAAAGTCCGGCGCCTGGTACGCCTACCAAG
GCAACAAGATCGGTCAAGGCAAAGCCAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGTGAGAAGTTGCTGAAAGCGGGTGCTGCTGCTGAAGCCGGCAAAGCTGCTGCTGCTGAAGCTGATGCCGATGA
CATGGCCGACGCTGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7B6K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.462

97.465

0.882
  recA Acinetobacter baylyi ADP1

76.758

92.113

0.707
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Vibrio cholerae strain A1552

74.312

92.113

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

92.113

0.685
  recA Glaesserella parasuis strain SC1401

68.571

98.592

0.676
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.423

0.563
  recA Streptococcus pyogenes NZ131

55.742

100

0.561
  recA Streptococcus mutans UA159

55.932

99.718

0.558
  recA Streptococcus mitis NCTC 12261

56.484

97.746

0.552
  recA Streptococcus mitis SK321

56.484

97.746

0.552
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

91.831

0.513