Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PW220_RS05640 Genome accession   NZ_CP118734
Coordinates   1126340..1127182 (-) Length   280 a.a.
NCBI ID   WP_248054085.1    Uniprot ID   -
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1121340..1132182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS05615 (PW220_05620) - 1121927..1122169 (-) 243 WP_002940680.1 KH domain-containing protein -
  PW220_RS05620 (PW220_05625) rpsP 1122191..1122463 (-) 273 WP_024392238.1 30S ribosomal protein S16 -
  PW220_RS05625 (PW220_05630) rplL 1122944..1123309 (-) 366 WP_105117900.1 50S ribosomal protein L7/L12 -
  PW220_RS05630 (PW220_05635) rplJ 1123375..1123869 (-) 495 WP_105117901.1 50S ribosomal protein L10 -
  PW220_RS05635 (PW220_05640) topA 1124154..1126247 (-) 2094 WP_248054086.1 type I DNA topoisomerase -
  PW220_RS05640 (PW220_05645) dprA 1126340..1127182 (-) 843 WP_248054085.1 DNA-processing protein DprA Machinery gene
  PW220_RS05645 (PW220_05650) - 1127241..1127798 (-) 558 WP_248054084.1 sugar O-acetyltransferase -
  PW220_RS05650 (PW220_05655) - 1127809..1128069 (-) 261 WP_023370330.1 metal-sensitive transcriptional regulator -
  PW220_RS05655 (PW220_05660) - 1128178..1128501 (+) 324 WP_024400619.1 rhodanese-like domain-containing protein -
  PW220_RS05660 (PW220_05665) - 1128498..1130150 (+) 1653 WP_248054083.1 FAD-dependent oxidoreductase -
  PW220_RS05665 (PW220_05670) - 1130259..1130810 (+) 552 WP_248050352.1 DUF1836 domain-containing protein -
  PW220_RS05670 (PW220_05675) trhA 1130800..1131450 (+) 651 WP_248054082.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31196.11 Da        Isoelectric Point: 8.4508

>NTDB_id=794693 PW220_RS05640 WP_248054085.1 1126340..1127182(-) (dprA) [Streptococcus iners subsp. hyiners strain 29892]
MNNFELFKWKKAGLTNLNINKVLAYQDLHGKKLTLRNIAVVSECKNPVLFMENYKNLDIKSCREEFNKFPSFSILDDVYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDKIYPKENRELQTYIGKHHLVLTEYEPGADPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEGGR
EVYAIPGSILDGKSDGCHHLIQEGAKCITSGIDILSDYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=794693 PW220_RS05640 WP_248054085.1 1126340..1127182(-) (dprA) [Streptococcus iners subsp. hyiners strain 29892]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTCTGACAAATCTTAATATTAATAAGGTTTTGGCCTATCAAGA
TTTACATGGTAAAAAATTGACTTTGCGAAATATCGCTGTCGTTTCTGAATGTAAAAATCCAGTGTTATTCATGGAAAACT
ATAAGAATTTGGATATCAAATCTTGTCGGGAAGAATTTAACAAGTTTCCATCCTTTTCGATTTTGGATGATGTCTATCCA
CTAGCATTGAAGCAAATTTATAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTGGAAAAATCCAAGCT
GGCAGTCGTTGGTACACGAAATGCAAGTAAAAATGGTATTCAGTCTGTTCAGAAAATTATCAAGGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTCTGGCAAGGGGAATTGATACAGCTGCCCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCCGTCATTGGAACGGGTTTGGATAAGATTTATCCCAAAGAAAACAGAGAATTACAGACCTATATCGGAAAACACCATTT
AGTTTTGACTGAATACGAACCAGGTGCAGACCCTCTCAAATATCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAAGCTAAGATGCGGTCTGGTAGCCTCATTACCTGCGAACGTGCCTTGGAAGGAGGAAGA
GAAGTCTATGCCATTCCTGGTTCCATTTTGGATGGAAAATCAGATGGTTGCCATCATTTGATTCAAGAAGGGGCAAAGTG
CATTACATCAGGCATTGACATCCTTTCAGACTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70

100

0.7
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.857

100

0.629
  dprA Lactococcus lactis subsp. cremoris KW2

59.286

100

0.593
  dprA Bacillus subtilis subsp. subtilis str. 168

49.761

74.643

0.371
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368
  dprA Haemophilus influenzae Rd KW20

38.636

94.286

0.364