NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	PW220_RS03290	Genome accession	NZ_CP118734
Coordinates	638285..638875 (+)	Length	196 a.a.
NCBI ID	WP_105118801.1	Uniprot ID	A0AA96VII1
Organism	Streptococcus iners subsp. hyiners strain 29892
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 633285..643875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PW220_RS03275 (PW220_03275)	gtfA	634051..635499 (+)	1449	WP_044766408.1	sucrose phosphorylase	-
PW220_RS03280 (PW220_03280)	-	635573..637189 (+)	1617	WP_248054623.1	glycoside hydrolase family 13 protein	-
PW220_RS03285 (PW220_03285)	upp	637271..637900 (+)	630	WP_172024241.1	uracil phosphoribosyltransferase	-
PW220_RS03290 (PW220_03290)	clpP	638285..638875 (+)	591	WP_105118801.1	ATP-dependent Clp protease proteolytic subunit	Regulator
PW220_RS03295 (PW220_03295)	-	638985..639251 (+)	267	WP_248054618.1	DUF2129 domain-containing protein	-
PW220_RS03300 (PW220_03300)	-	639403..640572 (+)	1170	WP_248051161.1	ABC transporter substrate-binding protein	-
PW220_RS03305 (PW220_03305)	-	640735..641622 (+)	888	WP_105118804.1	branched-chain amino acid ABC transporter permease	-
PW220_RS03310 (PW220_03310)	-	641625..642572 (+)	948	WP_105124204.1	branched-chain amino acid ABC transporter permease	-
PW220_RS03315 (PW220_03315)	-	642572..643336 (+)	765	WP_248054617.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21510.74 Da Isoelectric Point: 5.7110

                                >NTDB_id=794690 PW220_RS03290 WP_105118801.1 638285..638875(+) (clpP) [Streptococcus iners subsp. hyiners strain 29892]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMTAEETLAYGFIDQIMDNTKTK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=794690 PW220_RS03290 WP_105118801.1 638285..638875(+) (clpP) [Streptococcus iners subsp. hyiners strain 29892]

ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGAGAGCGTTCGTATGATATTTATTCGCGTTTGCTCAAAGACCGTAT

TATCATGTTGACAGGACCAGTTGAAGACAACATGGCAAACTCTATCATTGCCCAGTTGCTATTCCTTGATGCTCAAGATC

CTACAAAGGATATTTACCTTTATGTAAATACCCCTGGTGGTTCTGTGTCAGCAGGTCTTGCTATTGTTGATACCATGAAC

TTTATCAAGGCTGATGTGCAAACCATCGTTATGGGGACAGCAGCTAGCATGGGTACAATTATCGCTTCGAGCGGTGCCAA

AGGCAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAGCCAATGGGTGGAACAGGTGGTGGTACACAGCAAA

CGGATATGGCCATTGCAGCGGAACACTTGCTTAAAACCCGTAACAAATTAGAAAAAATCTTGGCTGATAATTCAGGAAAA

ACAGTGAAACAAATCCACAAGGATGCAGAACGCGATTACTGGATGACTGCAGAAGAAACTCTTGCATACGGCTTCATTGA

CCAAATTATGGACAATACAAAAACAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	91.837	100	0.918
clpP	Streptococcus pyogenes MGAS315	91.837	100	0.918
clpP	Streptococcus mutans UA159	90.306	100	0.903
clpP	Streptococcus pneumoniae R6	90.104	97.959	0.883
clpP	Streptococcus pneumoniae Rx1	90.104	97.959	0.883
clpP	Streptococcus pneumoniae D39	90.104	97.959	0.883
clpP	Streptococcus pneumoniae TIGR4	90.104	97.959	0.883
clpP	Streptococcus thermophilus LMG 18311	88.265	100	0.883
clpP	Streptococcus thermophilus LMD-9	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	100	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571

Detailed information NTG0794690