Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PWO56_RS04395 Genome accession   NZ_CP118699
Coordinates   868826..869146 (-) Length   106 a.a.
NCBI ID   WP_017410999.1    Uniprot ID   A0A1V2F1S1
Organism   Aeromonas hydrophila strain K522     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 863826..874146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO56_RS04375 (PWO56_04375) - 864143..865027 (-) 885 WP_077097209.1 IS982 family transposase -
  PWO56_RS04380 (PWO56_04380) - 865163..866134 (+) 972 WP_077097218.1 response regulator -
  PWO56_RS04385 (PWO56_04385) - 866209..867606 (-) 1398 WP_011707249.1 peptide MFS transporter -
  PWO56_RS04390 (PWO56_04390) galU 867820..868731 (-) 912 WP_039215911.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PWO56_RS04395 (PWO56_04395) comEA 868826..869146 (-) 321 WP_017410999.1 ComEA family DNA-binding protein Machinery gene
  PWO56_RS04400 (PWO56_04400) cysQ 869315..870085 (+) 771 WP_179101478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PWO56_RS04405 (PWO56_04405) - 870166..870462 (-) 297 WP_005309589.1 YciI family protein -
  PWO56_RS04410 (PWO56_04410) - 870488..871039 (-) 552 WP_024946223.1 septation protein A -
  PWO56_RS04415 (PWO56_04415) - 871144..872649 (-) 1506 WP_077097212.1 aminotransferase class V-fold PLP-dependent enzyme -
  PWO56_RS04420 (PWO56_04420) - 872874..873509 (+) 636 WP_077097210.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11210.05 Da        Isoelectric Point: 9.5773

>NTDB_id=794450 PWO56_RS04395 WP_017410999.1 868826..869146(-) (comEA) [Aeromonas hydrophila strain K522]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVTAAKESGKVNLNTANINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=794450 PWO56_RS04395 WP_017410999.1 868826..869146(-) (comEA) [Aeromonas hydrophila strain K522]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTCAACACCGCCAATATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCCCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCAGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2F1S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.727

100

0.547
  comEA Vibrio cholerae strain A1552

52.727

100

0.547
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

45.918

92.453

0.425
  comEA/comE1 Glaesserella parasuis strain SC1401

62.319

65.094

0.406
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA Legionella pneumophila str. Paris

38.235

96.226

0.368
  comEA Legionella pneumophila strain ERS1305867

38.235

96.226

0.368