Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PUN47_RS04895 | Genome accession | NZ_CP118599 |
| Coordinates | 1058939..1059235 (+) | Length | 98 a.a. |
| NCBI ID | WP_020327823.1 | Uniprot ID | S7IAY2 |
| Organism | Vibrio fluvialis strain 10M-VF | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1053939..1064235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUN47_RS04880 (PUN47_04880) | lon | 1053967..1056318 (+) | 2352 | WP_020327825.1 | endopeptidase La | - |
| PUN47_RS04885 (PUN47_04885) | - | 1056513..1056785 (+) | 273 | WP_004726502.1 | HU family DNA-binding protein | - |
| PUN47_RS04890 (PUN47_04890) | ppiD | 1056941..1058800 (+) | 1860 | WP_202650089.1 | peptidylprolyl isomerase | - |
| PUN47_RS04895 (PUN47_04895) | comEA | 1058939..1059235 (+) | 297 | WP_020327823.1 | ComEA family DNA-binding protein | Machinery gene |
| PUN47_RS04900 (PUN47_04900) | cmk | 1059415..1060095 (+) | 681 | WP_024374736.1 | (d)CMP kinase | - |
| PUN47_RS04905 (PUN47_04905) | rpsA | 1060200..1061870 (+) | 1671 | WP_020327821.1 | 30S ribosomal protein S1 | - |
| PUN47_RS04910 (PUN47_04910) | ihfB | 1062101..1062385 (+) | 285 | WP_020430001.1 | integration host factor subunit beta | - |
| PUN47_RS04915 (PUN47_04915) | - | 1062525..1062809 (+) | 285 | WP_020327818.1 | LapA family protein | - |
| PUN47_RS04920 (PUN47_04920) | lapB | 1062822..1063991 (+) | 1170 | WP_024374735.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10694.42 Da Isoelectric Point: 7.2029
>NTDB_id=793845 PUN47_RS04895 WP_020327823.1 1058939..1059235(+) (comEA) [Vibrio fluvialis strain 10M-VF]
MKIHKFWLAILLAVTWPVSHSWAEENVSATEGVEITVNINTAPAEELATLLKGIGLKKAQAIVDYREANGAFKSKEDLTQ
VKGIGPAIVAQNDKRILL
MKIHKFWLAILLAVTWPVSHSWAEENVSATEGVEITVNINTAPAEELATLLKGIGLKKAQAIVDYREANGAFKSKEDLTQ
VKGIGPAIVAQNDKRILL
Nucleotide
Download Length: 297 bp
>NTDB_id=793845 PUN47_RS04895 WP_020327823.1 1058939..1059235(+) (comEA) [Vibrio fluvialis strain 10M-VF]
ATGAAAATTCACAAATTTTGGTTGGCGATTCTCCTGGCTGTCACTTGGCCGGTGTCCCACAGTTGGGCGGAAGAAAATGT
TTCTGCTACAGAAGGGGTCGAGATAACTGTCAATATCAATACGGCACCAGCGGAAGAGTTGGCGACTTTACTCAAAGGTA
TCGGCCTGAAAAAAGCCCAAGCAATAGTTGACTATCGTGAGGCCAATGGTGCGTTCAAATCTAAAGAAGATCTGACGCAA
GTGAAAGGCATTGGGCCAGCTATCGTTGCTCAGAATGATAAACGTATCTTGTTATAA
ATGAAAATTCACAAATTTTGGTTGGCGATTCTCCTGGCTGTCACTTGGCCGGTGTCCCACAGTTGGGCGGAAGAAAATGT
TTCTGCTACAGAAGGGGTCGAGATAACTGTCAATATCAATACGGCACCAGCGGAAGAGTTGGCGACTTTACTCAAAGGTA
TCGGCCTGAAAAAAGCCCAAGCAATAGTTGACTATCGTGAGGCCAATGGTGCGTTCAAATCTAAAGAAGATCTGACGCAA
GTGAAAGGCATTGGGCCAGCTATCGTTGCTCAGAATGATAAACGTATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
63 |
100 |
0.643 |
| comEA | Vibrio cholerae strain A1552 |
63 |
100 |
0.643 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
57.447 |
95.918 |
0.551 |
| comEA | Vibrio campbellii strain DS40M4 |
55.208 |
97.959 |
0.541 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.276 |
88.776 |
0.429 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
38.532 |
100 |
0.429 |
| comEA | Legionella pneumophila str. Paris |
41.489 |
95.918 |
0.398 |
| comEA | Legionella pneumophila strain ERS1305867 |
41.489 |
95.918 |
0.398 |