Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PWW29_RS06915 Genome accession   NZ_CP118582
Coordinates   1438360..1438659 (+) Length   99 a.a.
NCBI ID   WP_005446580.1    Uniprot ID   A0A3A1QB85
Organism   Vibrio harveyi strain fish4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433360..1443659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS06905 - 1435867..1436139 (+) 273 WP_005430934.1 HU family DNA-binding protein -
  PWW29_RS06910 ppiD 1436355..1438214 (+) 1860 WP_009698342.1 peptidylprolyl isomerase -
  PWW29_RS06915 comEA 1438360..1438659 (+) 300 WP_005446580.1 helix-hairpin-helix domain-containing protein Machinery gene
  PWW29_RS06920 rrtA 1438812..1439363 (-) 552 WP_017818999.1 rhombosortase -
  PWW29_RS06925 - 1439367..1439984 (+) 618 WP_050935388.1 tRNA-uridine aminocarboxypropyltransferase -
  PWW29_RS06930 - 1440021..1441355 (-) 1335 WP_050923119.1 anti-phage deoxyguanosine triphosphatase -
  PWW29_RS06935 yfbR 1441359..1441943 (-) 585 WP_274790226.1 5'-deoxynucleotidase -
  PWW29_RS06940 - 1442027..1443241 (-) 1215 WP_005446588.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10936.80 Da        Isoelectric Point: 8.9385

>NTDB_id=793612 PWW29_RS06915 WP_005446580.1 1438360..1438659(+) (comEA) [Vibrio harveyi strain fish4]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=793612 PWW29_RS06915 WP_005446580.1 1438360..1438659(+) (comEA) [Vibrio harveyi strain fish4]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAGAAAAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A1QB85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

82.828

100

0.828
  comEA Vibrio parahaemolyticus RIMD 2210633

75.758

100

0.758
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

41.071

100

0.465
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Legionella pneumophila str. Paris

37.374

100

0.374
  comEA Legionella pneumophila strain ERS1305867

37.374

100

0.374