Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KH172YL63_RS18905 Genome accession   NZ_AP022842
Coordinates   3689435..3690031 (+) Length   198 a.a.
NCBI ID   WP_173107545.1    Uniprot ID   A0A6F8TY72
Organism   Bacillus sp. KH172YL63     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684435..3695031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS18885 (KH172YL63_37400) - 3684680..3685624 (-) 945 WP_173107542.1 sce7725 family protein -
  KH172YL63_RS18890 (KH172YL63_37410) - 3685625..3686428 (-) 804 WP_173107543.1 sce7726 family protein -
  KH172YL63_RS18895 (KH172YL63_37420) - 3686743..3687831 (-) 1089 WP_173107544.1 hypothetical protein -
  KH172YL63_RS18905 (KH172YL63_37430) clpP 3689435..3690031 (+) 597 WP_173107545.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KH172YL63_RS18910 (KH172YL63_37440) - 3690082..3692925 (-) 2844 WP_173107546.1 ATP-binding protein -
  KH172YL63_RS18915 (KH172YL63_37450) - 3692912..3693283 (-) 372 WP_173107547.1 response regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21811.14 Da        Isoelectric Point: 4.8818

>NTDB_id=79356 KH172YL63_RS18905 WP_173107545.1 3689435..3690031(+) (clpP) [Bacillus sp. KH172YL63]
MNLIPTVIEQTNRGERAYDIYSRLLKDRVIMLGSAIDDNVANSIVAQLLFLESENPEKDISIYINSPGGSITAGMAIYDT
IQYIKPDVQTICIGMAASMGAFLLAAGAKGKRLALPNAEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVISKDTDRDNFMTAERALEYGLIDRIITRNEMNNK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=79356 KH172YL63_RS18905 WP_173107545.1 3689435..3690031(+) (clpP) [Bacillus sp. KH172YL63]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAACCGCGGTGAGCGTGCGTATGACATTTATTCACGCCTGTTGAAAGA
CCGTGTGATCATGCTTGGAAGCGCCATTGATGATAATGTGGCAAACTCCATCGTGGCACAGCTTCTTTTCCTTGAGTCGG
AAAACCCGGAGAAGGATATCTCAATCTACATAAACTCTCCTGGTGGAAGCATCACGGCTGGTATGGCCATCTACGATACA
ATTCAATACATCAAGCCTGATGTACAGACGATCTGTATCGGTATGGCGGCGTCAATGGGTGCGTTCCTTCTTGCAGCTGG
TGCTAAAGGCAAGCGTCTTGCCCTGCCAAATGCTGAAGTAATGATTCACCAACCACTTGGTGGCGCACAGGGTCAGGCGA
CGGAAATCGAAATCGCTGCAAAGCGCATTCTATTCCTTCGTGAAAAACTGAACCAAATCCTTGCTGATCGCACAGGTCAA
CCACTTGAAGTGATTTCAAAGGATACAGACCGTGATAACTTCATGACAGCTGAAAGAGCGCTTGAATACGGATTGATTGA
CCGCATCATCACGCGCAATGAAATGAACAACAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TY72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.016

96.465

0.646
  clpP Streptococcus thermophilus LMG 18311

58.974

98.485

0.581
  clpP Streptococcus thermophilus LMD-9

58.974

98.485

0.581
  clpP Lactococcus lactis subsp. cremoris KW2

58.462

98.485

0.576
  clpP Streptococcus pneumoniae D39

56.633

98.99

0.561
  clpP Streptococcus pneumoniae Rx1

56.633

98.99

0.561
  clpP Streptococcus pneumoniae R6

56.633

98.99

0.561
  clpP Streptococcus pneumoniae TIGR4

56.633

98.99

0.561
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.41

98.485

0.556
  clpP Streptococcus mutans UA159

56.122

98.99

0.556
  clpP Streptococcus pyogenes JRS4

55.897

98.485

0.551
  clpP Streptococcus pyogenes MGAS315

55.897

98.485

0.551

Multiple sequence alignment