Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PWW27_RS01930 Genome accession   NZ_CP118576
Coordinates   405401..405700 (+) Length   99 a.a.
NCBI ID   WP_045490418.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400401..410700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS01920 - 402908..403180 (+) 273 WP_005430934.1 HU family DNA-binding protein -
  PWW27_RS01925 ppiD 403396..405255 (+) 1860 WP_110415489.1 peptidylprolyl isomerase -
  PWW27_RS01930 comEA 405401..405700 (+) 300 WP_045490418.1 helix-hairpin-helix domain-containing protein Machinery gene
  PWW27_RS01935 rrtA 405853..406404 (-) 552 WP_005446582.1 rhombosortase -
  PWW27_RS01940 - 406408..407025 (+) 618 WP_110415487.1 tRNA-uridine aminocarboxypropyltransferase -
  PWW27_RS01945 - 407060..408394 (-) 1335 WP_172458606.1 anti-phage deoxyguanosine triphosphatase -
  PWW27_RS01950 yfbR 408398..408982 (-) 585 WP_274886017.1 5'-deoxynucleotidase -
  PWW27_RS01955 - 409066..410280 (-) 1215 WP_274886018.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10937.74 Da        Isoelectric Point: 6.9816

>NTDB_id=793460 PWW27_RS01930 WP_045490418.1 405401..405700(+) (comEA) [Vibrio harveyi strain fish1]
MKWMLTLCLLLLAPMSWAEESESANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=793460 PWW27_RS01930 WP_045490418.1 405401..405700(+) (comEA) [Vibrio harveyi strain fish1]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTGAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

82.828

100

0.828
  comEA Vibrio parahaemolyticus RIMD 2210633

75.758

100

0.758
  comEA Vibrio cholerae C6706

56.566

100

0.566
  comEA Vibrio cholerae strain A1552

56.566

100

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

41.071

100

0.465
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Legionella pneumophila str. Paris

38.384

100

0.384
  comEA Legionella pneumophila strain ERS1305867

38.384

100

0.384