Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PWC21_RS20835 Genome accession   NZ_CP118545
Coordinates   4019619..4020860 (-) Length   413 a.a.
NCBI ID   WP_274862939.1    Uniprot ID   -
Organism   Priestia aryabhattai strain G5.MM8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4014619..4025860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWC21_RS20815 (PWC21_20815) spoVS 4015179..4015439 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  PWC21_RS20820 (PWC21_20820) - 4015663..4016460 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  PWC21_RS20825 (PWC21_20825) rny 4016542..4018101 (-) 1560 WP_013058803.1 ribonuclease Y -
  PWC21_RS20830 (PWC21_20830) recA 4018382..4019419 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  PWC21_RS20835 (PWC21_20835) cinA 4019619..4020860 (-) 1242 WP_274862939.1 competence/damage-inducible protein A Machinery gene
  PWC21_RS20840 (PWC21_20840) pgsA 4020877..4021461 (-) 585 WP_028411382.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PWC21_RS20845 (PWC21_20845) - 4021606..4022580 (-) 975 WP_025750272.1 helix-turn-helix domain-containing protein -
  PWC21_RS20850 (PWC21_20850) - 4022602..4023393 (-) 792 WP_028411383.1 DUF3388 domain-containing protein -
  PWC21_RS20855 (PWC21_20855) - 4023607..4023867 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  PWC21_RS20860 (PWC21_20860) ymfI 4023933..4024658 (-) 726 WP_028411384.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44974.10 Da        Isoelectric Point: 4.9937

>NTDB_id=793219 PWC21_RS20835 WP_274862939.1 4019619..4020860(-) (cinA) [Priestia aryabhattai strain G5.MM8]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSTVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YEAYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELMAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKTIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=793219 PWC21_RS20835 WP_274862939.1 4019619..4020860(-) (cinA) [Priestia aryabhattai strain G5.MM8]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGGCAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTATTATCATACAGTAGTAGGAGATAATGCACAGCGCTTGAAAGAAGTGA
TTGCTACAGCTCAAACACGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGTTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTACTTGAAGGTTCGACAGTGCTCCCTAATGATTACGGAA
TGGCTCCAGGTATGGGGCTTACAGTAGAGGGAAAACACTATATGCTATTCCCAGGGCCGCCAAAAGAGCTCTATCCAATG
TATGAAGCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGTTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCACCGCTTG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAATGGCACAAGGCTTGACGATTGCTTCAGCCGAAAGTTTAACCGGCGGGTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTTAAAGGCAGCCTGGTAGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGCCCCTCTAAACAAGAAGGACACCCTGTAGGAACAGTGCATATAGGGG
TCGCTTATAAGGATCAAACTCCTCAAGTTTACAGTTTGCAGCTATCTGGAAGCCGCCAAGGAATTCGTTCACGAACGGTT
AATTACGGCTGTCATTACGTATTGAAGACGATAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus mitis SK321

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.472
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.467
  cinA Streptococcus pneumoniae R6

45.952

100

0.467
  cinA Streptococcus pneumoniae D39

45.714

100

0.465
  cinA Streptococcus mutans UA159

44.686

100

0.448