Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HRS36_RS11260 Genome accession   NZ_AP022839
Coordinates   2373887..2376007 (-) Length   706 a.a.
NCBI ID   WP_173237384.1    Uniprot ID   -
Organism   Legionella antarctica strain TUM19329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2368887..2381007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS11235 (TUM19329_22680) - 2369194..2369625 (-) 432 WP_173238512.1 universal stress protein -
  HRS36_RS11240 (TUM19329_22690) pnuC 2369987..2370613 (+) 627 WP_173237381.1 nicotinamide riboside transporter PnuC -
  HRS36_RS11245 (TUM19329_22700) - 2370579..2371994 (-) 1416 WP_173237382.1 AAA family ATPase -
  HRS36_RS11250 (TUM19329_22710) aroB 2371999..2373102 (-) 1104 WP_173237383.1 3-dehydroquinate synthase -
  HRS36_RS11255 (TUM19329_22720) aroK 2373089..2373616 (-) 528 WP_018576163.1 shikimate kinase AroK -
  HRS36_RS11260 (TUM19329_22730) pilQ 2373887..2376007 (-) 2121 WP_173237384.1 type IV pilus secretin PilQ Machinery gene
  HRS36_RS11265 (TUM19329_22750) pilP 2376017..2376541 (-) 525 WP_173237385.1 pilus assembly protein PilP Machinery gene
  HRS36_RS11270 (TUM19329_22760) pilO 2376538..2377137 (-) 600 WP_173237386.1 type 4a pilus biogenesis protein PilO Machinery gene
  HRS36_RS11275 (TUM19329_22770) pilN 2377152..2377697 (-) 546 WP_173237387.1 PilN domain-containing protein Machinery gene
  HRS36_RS11280 (TUM19329_22780) pilM 2377702..2378760 (-) 1059 WP_173237388.1 type IV pilus assembly protein PilM Machinery gene
  HRS36_RS11285 (TUM19329_22790) - 2379086..2380159 (+) 1074 WP_173237389.1 hypothetical protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 78183.42 Da        Isoelectric Point: 9.5964

>NTDB_id=79301 HRS36_RS11260 WP_173237384.1 2373887..2376007(-) (pilQ) [Legionella antarctica strain TUM19329]
MRTFIAILIISASIGVAFSRDNSLISVKVIPLPEDKVRIDFEFAKTLKQLPASFITQKPPRLILDFINSDMHLPLEQKMQ
HVKLGSVNSYNIVGVGERVRVMLELSRTVSYSGSVAGRVYSLVLNGKSNEIFEPAKEVFITNQVVNAKHSINHIDFRGIE
KQGGRVLINVSDTSIPIDVTQTGKEVVVNFLNTKIPQQLMKRFDVSDFHSPAQVITMQQDRKNVRMTILNKGDYGHFVYQ
INNQFMVDIFPLTAEELHQAKLKKQVFTGKRISLNFQNINIRAVLQLLADFTGVNMVVSDNVKGDITLRLNDIPWDQALD
IILTTQGLDKRRTGNVMLIDTKANLDKMEESKLKSQQIIQKLEPIRSDLLQINYAKAADLAILIKDKQNSLLSEKGKLSV
DARTNTIWIQDTGTKIEEVRDLIKQLDIPVKQVLIEARIVEVSKDFSQDIGIRWGISRSPTLSGSLAGANQMQQAVATAN
VAPFAAAANVTPFTDRLNLDLIAAPANLANPATLGIALAKINDNILLDLELSALESEGRAELISSPRLITINQQAALIES
GQEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDNKILMDLQINQDTASPQTFNGVPAILTKEIQTNVLVNNGQTIVLG
GIYTQDKTKTINRIPFFGELPVVGVLFRNKQVGINNNELLIFITPKIITNSLSITTIEGREKEVYK

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=79301 HRS36_RS11260 WP_173237384.1 2373887..2376007(-) (pilQ) [Legionella antarctica strain TUM19329]
TTGAGAACGTTCATTGCTATTTTAATAATAAGTGCCAGTATCGGAGTGGCATTTTCTAGAGATAATTCACTTATATCAGT
TAAAGTAATCCCCTTACCGGAAGATAAGGTACGGATAGACTTTGAATTTGCTAAAACATTAAAACAGTTACCGGCAAGCT
TCATTACTCAAAAGCCCCCAAGACTTATTTTGGATTTTATTAATTCAGACATGCATTTACCGTTAGAGCAGAAAATGCAA
CACGTGAAATTAGGTTCGGTAAATTCATACAACATTGTGGGGGTAGGTGAACGAGTCAGAGTTATGCTGGAACTATCTCG
TACAGTATCTTACTCTGGTAGTGTTGCCGGTCGTGTTTATAGTCTTGTTTTAAACGGTAAAAGTAATGAGATCTTTGAGC
CTGCAAAAGAAGTTTTTATAACGAATCAAGTGGTTAATGCGAAACATTCAATAAATCATATTGATTTTCGTGGCATAGAA
AAACAAGGAGGAAGAGTGCTTATTAATGTTTCTGACACCAGTATTCCTATAGATGTAACCCAAACAGGTAAAGAAGTAGT
GGTAAATTTTTTAAATACAAAAATTCCACAGCAACTTATGAAGCGCTTTGATGTATCTGATTTTCATAGTCCAGCGCAGG
TCATTACCATGCAACAGGATAGAAAAAATGTGCGCATGACCATATTGAATAAGGGTGATTATGGCCATTTTGTGTATCAG
ATAAATAATCAGTTTATGGTCGATATATTTCCATTGACTGCGGAAGAACTTCACCAGGCAAAACTTAAAAAACAAGTATT
TACGGGTAAAAGAATCTCTTTAAACTTCCAGAATATTAATATCCGTGCAGTTTTACAGCTGCTTGCTGATTTTACCGGAG
TAAATATGGTGGTTAGCGATAACGTAAAGGGGGATATCACTTTAAGATTAAACGACATCCCTTGGGACCAGGCATTAGAT
ATTATTTTGACAACCCAAGGTTTAGATAAGCGCAGAACGGGGAACGTGATGTTGATTGATACTAAAGCTAATCTCGATAA
GATGGAAGAGTCAAAATTAAAAAGTCAACAAATCATTCAGAAATTAGAGCCTATACGTTCTGACTTATTACAAATCAACT
ATGCGAAAGCAGCTGATCTGGCAATTTTAATAAAAGACAAACAAAATTCACTACTGTCTGAAAAAGGTAAATTAAGCGTC
GATGCCAGGACGAATACAATCTGGATTCAAGATACTGGAACAAAAATAGAAGAAGTAAGGGACTTGATCAAGCAATTAGA
TATTCCCGTGAAACAAGTATTGATTGAGGCACGTATAGTCGAAGTATCTAAAGATTTTAGCCAGGATATAGGAATCAGAT
GGGGTATTTCCAGATCTCCAACTTTAAGTGGTTCGCTAGCAGGTGCTAACCAAATGCAACAGGCTGTAGCAACGGCTAAT
GTAGCGCCATTCGCTGCAGCGGCCAATGTGACCCCCTTCACTGACAGATTAAACCTGGATCTAATTGCTGCACCAGCAAA
TCTTGCTAATCCAGCTACACTTGGTATCGCTTTGGCTAAAATTAATGATAATATATTACTCGATTTGGAGCTTTCTGCTC
TGGAAAGTGAAGGACGTGCTGAGTTAATATCCAGCCCGAGACTGATTACTATTAACCAACAAGCAGCGCTGATAGAATCA
GGACAAGAGATTCCATATCAAGAAGCCACCTCAAGTGGCGCTACTGCAGTAGCTTTTAAAAAGGCAGTACTGAGCTTGAA
GGTGACTCCACAAATCACTCCAGACAATAAAATTTTAATGGATTTACAGATTAACCAAGACACTGCATCGCCTCAGACAT
TTAACGGGGTTCCTGCAATCCTTACCAAGGAGATACAGACCAATGTTTTGGTAAATAATGGCCAGACTATAGTTCTTGGG
GGGATCTATACTCAAGATAAGACCAAGACGATCAATAGGATACCCTTTTTTGGTGAGTTACCAGTTGTAGGTGTTTTGTT
CAGAAACAAACAGGTTGGAATAAATAACAATGAGTTGCTTATTTTCATTACCCCGAAAATAATAACTAATTCTTTGTCAA
TTACTACGATTGAAGGTCGGGAAAAAGAGGTATATAAATAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-112)

Bacterial type II/III secretion system short domain (Secretin_N)

(370-432)

Bacterial type II and III secretion system protein (Secretin)

(533-688)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

81.042

97.875

0.793
  pilQ Legionella pneumophila strain ERS1305867

81.132

97.592

0.792
  comQ Acinetobacter baylyi ADP1

37.931

98.584

0.374
  pilQ Pseudomonas aeruginosa PAK

37.5

98.584

0.37

Multiple sequence alignment