Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   PVK49_RS07710 Genome accession   NZ_CP118306
Coordinates   1539317..1539868 (-) Length   183 a.a.
NCBI ID   WP_080343537.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20154608     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534317..1544868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS07680 (PVK49_07665) rsfS 1535090..1535443 (-) 354 WP_011017339.1 ribosome silencing factor -
  PVK49_RS07685 (PVK49_07670) yqeK 1535467..1536060 (-) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  PVK49_RS07690 (PVK49_07675) - 1536057..1536689 (-) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  PVK49_RS07695 (PVK49_07680) yhbY 1536758..1537066 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  PVK49_RS07700 (PVK49_07685) yqeH 1537091..1538209 (-) 1119 WP_047235968.1 ribosome biogenesis GTPase YqeH -
  PVK49_RS07705 (PVK49_07690) - 1538209..1538736 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  PVK49_RS07710 (PVK49_07695) comX/sigX/comX2/sigX2 1539317..1539868 (-) 552 WP_080343537.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22250.07 Da        Isoelectric Point: 10.0375

>NTDB_id=791489 PVK49_RS07710 WP_080343537.1 1539317..1539868(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 20154608]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSPERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=791489 PVK49_RS07710 WP_080343537.1 1539317..1539868(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 20154608]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCCAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.