NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	PT671_RS13225	Genome accession	NZ_CP118021
Coordinates	2679279..2679875 (-)	Length	198 a.a.
NCBI ID	WP_003219849.1	Uniprot ID	A0A9W5LL57
Organism	Bacillus spizizenii strain B-354
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2674279..2684875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PT671_RS13200	-	2674620..2675597 (-)	978	WP_079996468.1	2-hydroxyacid dehydrogenase	-
PT671_RS13205	-	2675991..2676584 (+)	594	WP_079996466.1	beta-class carbonic anhydrase	-
PT671_RS13210	-	2676603..2678204 (+)	1602	WP_003219845.1	SulP family inorganic anion transporter	-
PT671_RS13215	-	2678231..2678551 (-)	321	WP_003219846.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
PT671_RS13220	-	2678669..2679244 (+)	576	WP_003219847.1	TIGR00730 family Rossman fold protein	-
PT671_RS13225	clpP	2679279..2679875 (-)	597	WP_003219849.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
PT671_RS13235	-	2680376..2680888 (+)	513	WP_003219851.1	DUF3231 family protein	-
PT671_RS13240	-	2680930..2681244 (-)	315	WP_003219853.1	DMT family transporter	-
PT671_RS13245	-	2681244..2681579 (-)	336	WP_003219855.1	DMT family transporter	-
PT671_RS13250	-	2681660..2682244 (-)	585	WP_003219856.1	TetR family transcriptional regulator	-
PT671_RS13255	aspP	2682339..2683901 (-)	1563	WP_003219858.1	aspartate/proton symporter AspP	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21873.14 Da Isoelectric Point: 4.7114

                                >NTDB_id=789166 PT671_RS13225 WP_003219849.1 2679279..2679875(-) (clpP) [Bacillus spizizenii strain B-354]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=789166 PT671_RS13225 WP_003219849.1 2679279..2679875(-) (clpP) [Bacillus spizizenii strain B-354]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG

AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCTAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCGTTCCTGCTTGCTGCCGG

AGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTTATGATTCACCAGCCTCTTGGCGGAGCTCAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAGCGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

TAAAATTCTGACTCGTAACACAGAAGAACAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	96.465	100	0.965
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.063	96.465	0.657
clpP	Streptococcus thermophilus LMG 18311	59.067	97.475	0.576
clpP	Streptococcus thermophilus LMD-9	59.067	97.475	0.576
clpP	Streptococcus pneumoniae Rx1	57.732	97.98	0.566
clpP	Streptococcus pneumoniae D39	57.732	97.98	0.566
clpP	Streptococcus pneumoniae R6	57.732	97.98	0.566
clpP	Streptococcus pneumoniae TIGR4	57.732	97.98	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	57.216	97.98	0.561
clpP	Streptococcus pyogenes JRS4	56.477	97.475	0.551
clpP	Streptococcus pyogenes MGAS315	56.477	97.475	0.551
clpP	Streptococcus mutans UA159	55.155	97.98	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.155	97.98	0.54

Detailed information NTG0789166