Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | PUB92_RS03310 | Genome accession | NZ_CP117919 |
| Coordinates | 693442..693762 (-) | Length | 106 a.a. |
| NCBI ID | WP_005309580.1 | Uniprot ID | K1K148 |
| Organism | Aeromonas dhakensis strain PSKL.DM | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 688442..698762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUB92_RS03290 (PUB92_03290) | - | 688738..689415 (-) | 678 | WP_274182132.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| PUB92_RS03295 (PUB92_03295) | - | 689772..690743 (+) | 972 | WP_005309570.1 | response regulator | - |
| PUB92_RS03300 (PUB92_03300) | - | 690825..692222 (-) | 1398 | WP_274182133.1 | peptide MFS transporter | - |
| PUB92_RS03305 (PUB92_03305) | galU | 692436..693347 (-) | 912 | WP_139726426.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| PUB92_RS03310 (PUB92_03310) | comEA | 693442..693762 (-) | 321 | WP_005309580.1 | ComEA family DNA-binding protein | Machinery gene |
| PUB92_RS03315 (PUB92_03315) | cysQ | 693929..694699 (+) | 771 | WP_268038017.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| PUB92_RS03320 (PUB92_03320) | - | 694777..695073 (-) | 297 | WP_095593382.1 | YciI family protein | - |
| PUB92_RS03325 (PUB92_03325) | - | 695098..695661 (-) | 564 | WP_005309592.1 | septation protein A | - |
| PUB92_RS03330 (PUB92_03330) | - | 695766..697271 (-) | 1506 | WP_274182134.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| PUB92_RS03335 (PUB92_03335) | trhA | 697490..698125 (+) | 636 | WP_274182135.1 | PAQR family membrane homeostasis protein TrhA | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11183.03 Da Isoelectric Point: 9.5773
>NTDB_id=788340 PUB92_RS03310 WP_005309580.1 693442..693762(-) (comEA) [Aeromonas dhakensis strain PSKL.DM]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=788340 PUB92_RS03310 WP_005309580.1 693442..693762(-) (comEA) [Aeromonas dhakensis strain PSKL.DM]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACTGCACTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAACTTGCCGATGTCAGCGGTATCGGGCCCGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCAAACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACTGCACTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAACTTGCCGATGTCAGCGGTATCGGGCCCGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
53.636 |
100 |
0.557 |
| comEA | Vibrio cholerae strain A1552 |
53.636 |
100 |
0.557 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
47.423 |
91.509 |
0.434 |
| comEA | Legionella pneumophila strain ERS1305867 |
41.837 |
92.453 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
41.837 |
92.453 |
0.387 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
52.632 |
71.698 |
0.377 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
63.492 |
59.434 |
0.377 |