Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PUB83_RS14385 Genome accession   NZ_CP117918
Coordinates   3219158..3219478 (+) Length   106 a.a.
NCBI ID   WP_201887605.1    Uniprot ID   -
Organism   Aeromonas hydrophila subsp. hydrophila strain PSKL.DP     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3214158..3224478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUB83_RS14360 (PUB83_11825) - 3214795..3215430 (-) 636 WP_016351856.1 hemolysin III family protein -
  PUB83_RS14365 (PUB83_11830) - 3215655..3217160 (+) 1506 WP_274276986.1 aminotransferase class V-fold PLP-dependent enzyme -
  PUB83_RS14370 (PUB83_11835) - 3217265..3217816 (+) 552 WP_024946223.1 septation protein A -
  PUB83_RS14375 (PUB83_11840) - 3217842..3218138 (+) 297 WP_005309589.1 YciI family protein -
  PUB83_RS14380 (PUB83_11845) cysQ 3218219..3218989 (-) 771 WP_274276987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PUB83_RS14385 (PUB83_11850) comEA 3219158..3219478 (+) 321 WP_201887605.1 ComEA family DNA-binding protein Machinery gene
  PUB83_RS14390 (PUB83_11855) galU 3219574..3220485 (+) 912 WP_274276988.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PUB83_RS14395 (PUB83_11860) - 3220699..3222096 (+) 1398 WP_011707249.1 peptide MFS transporter -
  PUB83_RS14400 (PUB83_11865) - 3222169..3223140 (-) 972 WP_043119376.1 response regulator -
  PUB83_RS14405 (PUB83_11870) - 3223480..3224157 (+) 678 WP_274276989.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11240.08 Da        Isoelectric Point: 9.5773

>NTDB_id=788324 PUB83_RS14385 WP_201887605.1 3219158..3219478(+) (comEA) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
MNYKTLTTTLLLSCLPLLSQPLLAADKPAAKPATTVTAAKESGKVNLNTANINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=788324 PUB83_RS14385 WP_201887605.1 3219158..3219478(+) (comEA) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
ATGAACTACAAGACCCTGACCACCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTGAACACCGCCAATATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCCCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTCGATCAGCTGGCCGATGTGAGCGGCATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.727

100

0.547
  comEA Vibrio cholerae strain A1552

52.727

100

0.547
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

45.918

92.453

0.425
  comEA/comE1 Glaesserella parasuis strain SC1401

62.319

65.094

0.406
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA Legionella pneumophila str. Paris

38.235

96.226

0.368
  comEA Legionella pneumophila strain ERS1305867

38.235

96.226

0.368